SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4819

Length: 940 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4819

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10412	18/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AP2/EREBP transcription factor [Arabidopsis thaliana]	-	-	2.0e-16	60%
FL-Next	tr=DREB protein; Taxus cuspidata (Japanese yew).	-	-	0.0	64%
Blast2go	ap2 erf domain-containing transcription factor	-	-	8.11769e-19	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to trehalose stimulus	GO:0010353	Biological Process	8.11769e-19	85%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	8.11769e-19	85%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	8.11769e-19	85%
Blast2go	zinc ion transmembrane transport	GO:0071577	Biological Process	8.11769e-19	85%
Blast2go	response to water deprivation	GO:0009414	Biological Process	8.11769e-19	85%
Blast2go	starch catabolic process	GO:0005983	Biological Process	8.11769e-19	85%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	8.11769e-19	85%
Blast2go	response to osmotic stress	GO:0006970	Biological Process	8.11769e-19	85%
Blast2go	mitochondria-nucleus signaling pathway	GO:0031930	Biological Process	8.11769e-19	85%
Blast2go	regulation of protein localization	GO:0032880	Biological Process	8.11769e-19	85%
Blast2go	lateral root development	GO:0048527	Biological Process	8.11769e-19	85%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	8.11769e-19	85%
Blast2go	hexokinase-dependent signaling	GO:0009747	Biological Process	8.11769e-19	85%
Blast2go	regulation of triglyceride catabolic process	GO:0010896	Biological Process	8.11769e-19	85%
Blast2go	seed development	GO:0048316	Biological Process	8.11769e-19	85%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	8.11769e-19	85%
Blast2go	zinc ion transmembrane transporter activity	GO:0005385	Molecular Function	8.11769e-19	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	8.11769e-19	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	8.11769e-19	85%
Blast2go	nucleus	GO:0005634	Cellular Component	8.11769e-19	85%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3		IPR004348	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
482			16	83	0.994512
485			16	83	0.994512
488		83	16		0.994512
491		16	83		0.994512
492		83		16	0.994512
493		83		16	0.994512
494		83	16		0.994512
497		83		16	0.994512
499			83	16	0.994512
501	16	83			0.994512
504	83	16			0.994512
554		14		85	0.993533
557		85	14		0.993533
558			14	85	0.993533
560		85		14	0.993533
562			85	14	0.993533
564	14	85			0.993533
722		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
796	814	GTCCCA GTCCCA GTCCCA G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain