SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4752

Length: 610 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4752

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene881	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L3-2 [Arabidopsis thaliana] sp\|Q9LRN8.1\|RK3B_ARATH RecName: Full=50S ribosomal protein L3-2, chloroplastic; Flags: Precursor dbj\|BAB02923.1\| 50S ribosomal protein L3 [Arabidopsis thaliana] gb\|AEE75957.1\| 50S ribosomal protein L3-2 [A	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	50s ribosomal protein l3-2	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	75%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	75%
Blast2go	ribosome	GO:0005840	Cellular Component	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L3	IPR000597	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
97		33		66	0.997452
99			66	33	0.997452
100		33	66		0.997452
101			33	66	0.997452
106		33	66		0.997452
107	66			33	0.997452
109	66		33		0.997452
110	66		33		0.997452
113	66		33		0.997452
117		33	66		0.997452
194	85		14		0.993533
195			85	14	0.993533
199	14			85	0.993533
201		14	85		0.993533
202	85			14	0.993533
203	85			14	0.993533
205		85	14		0.993533
207		85		14	0.993533
210	14		85		0.993533
211		14	85		0.993533
394			66	33	0.997452
411	80		20		0.995493
412			80	20	0.995493
414	80		20		0.995493
417	20	80			0.995493
418		20		80	0.995493
420	80			20	0.995493
434	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain