SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4747

Length: 1961 nt

UniGene Fasta

>uagpf_v2_unigene4747
CGTCGTGACCTTGGCTGTCACTCATCTCTCGTGAGCTTGGCGCGCTTGGGTATTACAGAAGCGCGAAGAAATGCAAGGAAAAGTTTGAAAATATCAGCAAATATTATAAAAAAACCAAGGATGGAAAAATCGGAAGGCAGGATGGTAAGAGTTATAGGTTTTTCAGTGAGCTTGAAGCTCTTTATGGCAACAGCCATGGCGGTTCTCGTTTTGCCAATCGTACTCGTGGCCTGGCTGTCACTCAGCATTGGAGGGCCTGAAAAAACCAGCAATGCAGCATCACTAAACTTGTCATCTGATAACACCTCAGAGGATGATCACTGTAATAATACCCCGCTGCAAAACCCTAGCCCTCCCAAAACTCTTGAACAGGTTAACAGGAAGAAGAGAAAGAGGAAGCATTTGGCATCGATAACAGCGTTCTTCGAGAGCTTGGTCAAGCAGGTAATGGGGCATCAGGAAGAACTGCACAGAAAATTCCTAGAAGCAATAGATCGCCGAGAGCAAGAGAGATTGAAAAGAGAAGAAACCTGGAAGCGTCAGGAAATGGCCCGTTTAAACAGAGAAACTGAACTTCGTGCACAGGAGCATGCCCTTGCATCGAGTCGTGAAGCAGCCATTGTTGCATTTCTGCAGAAAATCACAGGGCAGAATCTGAATCTCCCCACTTCAGTCCCACCACCCTCGGTACCAACTGAACCACCAACTGAAACACAACAAGACCAGGACAAATTAGCCACTGATACAGCTATGCCGGACCCTAACTGCAAAAGGTGGCCTAAGCCTGAAGTACAGTCCTTGATAAGGCTACGGAGTAACATGGATGTCAGATTTCGAGAGGCAGGATTCAAAGGACCGCTGTGGGAAGAAATTTCTTCTGGAATGGCTAGCCTTGGATTCCAGAGAAGTGCTAAGAGATGCAAAGAAAAGTGGGAGAATATCAACAAATATTTCAGGAAGACCAAGGATAACATTAAAAAACGCCCCCAAAATGCCAAGACATGTCCTTACTTTCATCAGCTTAACCTTCTATATAGTGATAATCCTAAGTCGAGCAAGACAGATCAATCTCATTCCTCTGATGATCAAGCTGATCCAGACCATGAGAACATCAATGATAATAATAATGGAGAAGATGATGAACATGCTCAAACTAGGCCATCTGATCATTCAGAACTTCTAGCAGCTATGATCCATGGAGATCAGGCAGGGCAAACATCCTTGGCAAAAACCAATGCTGCAACTACTACTGTGCACGACCATTTCTTCCGAGATGACCATCCTGTTGATCAAGTACAGAAACGCTTCAAAACAAGACAGCATCTGCCTACTGGAATCCAAGCCTCAAATGCAATGGGCATCATCACTGAAAGTGGATCCAAACCCAATGCCTTTGAAGACACATTCTCAGGCAATATTAAAAAGGGCAGCACAATGGACAGTCTGGTAAAAGAAATGCTAGAGATGCAGCAGCAGAAATTTCTTGATGCTTTTGAGAGGAGAGAACATGAACAAGAACAACAGCAAAGCATGAGTAGTGAAGAGAGACATCACCACCACCACCCACAAGAAACAACACAGGATGATCGTTCACAGTCTGCTCTGATGGCTTTGGTGCATAAACTCACTGTGAATGCTGCGGATTATGCAACGGGTTGAATATTTGAATGTACAGGACTCCTTCCTATGTACCATATGTGTTCTCTTATGTGCTATTAGGTTGCCATCGGAAGTATGTTCAGTGTATGAAGGCGGATCAACTCACAAGGTGAGTCTCGGTAGGCTAAAGCAAAGTGCACTTCATATATTATGTAGTTGTTTGTTCAGTTTAAAATTTCCATCAGCGAGAGTCAAATCCTTTTGGCCTGCTGCATAATTTTTATCAGTTAAATTCTTTGAGACCATAGATATTTAATATACTGAACTGTATAGTTGTAACTTTATCTATGCAATAATGAAAG

Ace file of the UniGene uagpf_v2_unigene4747

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3490	46/50

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADF_DNA_bdg domain containing protein	-	-	0.0001	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	protein	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: your sequence is longer than subject: 553 - 378

Fln protein: RRDLGCHSSLVSLARLGITEARRNARKSLKISANIIKKPRMEKSEGRMVRVIGFSVSLKLFMATAMAVLVLPIVLVAWLSLSIGGPEKTSNAASLNLSSDNTSEDDHCNNTPLQNPSPPKTLEQVNRKKRKRKHLASITAFFESLVKQVMGHQEELHRKFLEAIDRREQERLKREETWKRQEMARLNRETELRAQEHALASSREAAIVAFLQKITGQNLNLPTSVPPPSVPTEPPTETQQDQDKLATDTAMPDPNCKRWPKPEVQSLIRLRSNMDVRFREAGFKGPLWEEISSGMASLGFQRSAKRCKEKWENINKYFRKTKDNIKKRPQNAKTCPYFHQLNLLYSDNPKSSKTDQSHSSDDQADPDHENINDNNNGEDDEHAQTRPSDHSELLAAMIHGDQAGQTSLAKTNAATTTVHDHFFRDDHPVDQVQKRFKTRQHLPTGIQASNAMGIITESGSKPNAFEDTFSGNIKKGSTMDSLVKEMLEMQQQKFLDAFERREHEQEQQQSMSSEERHHHHHPQETTQDDRSQSALMALVHKLTVNAADYATG*

Protein Length: 554

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTCGTGAGCTTGGCGCGCTTGGGTATTACAGAAGCGCGAAGAAATGCAAGGAAAAGTTTGAAAATATCAGCAAATATTATAAAAAAACCAAGGATGGAAAAATCGGAAGGCAGGATGGTAAGAGTTATAGGTTTTTCAGTGAGCTTGAAGCTCTTTATGGCAACAGCCATGGCGGTTCTCGTTTTGCCAATCGTACTCGTGGCCTGGCTGTCACTCAGCATTGGAGGGCCTGAAAAAACCAGCAATGCAGCATCACTAAACTTGTCATCTGATAACACCTCAGAGGATGATCACTGTAATAATACCCCGCTGCAAAACCCTAGCCCTCCCAAAACTCTTGAACAGGTTAACAGGAAGAAGAGAAAGAGGAAGCATTTGGCATCGATAACAGCGTTCTTCGAGAGCTTGGTCAAGCAGGTAATGGGGCATCAGGAAGAACTGCACAGAAAATTCCTAGAAGCAATAGATCGCCGAGAGCAAGAGAGATTGAAAAGAGAAGAAACCTGGAAGCGTCAGGAAATGGCCCGTTTAAACAGAGAAACTGAACTTCGTGCACAGGAGCATGCCCTTGCATCGAGTCGTGAAGCAGCCATTGTTGCATTTCTGCAGAAAATCACAGGGCAGAATCTGAATCTCCCCACTTCAGTCCCACCACCCTCGGTACCAACTGAACCACCAACTGAAACACAACAAGACCAGGACAAATTAGCCACTGATACAGCTATGCCGGACCCTAACTGCAAAAGGTGGCCTAAGCCTGAAGTACAGTCCTTGATAAGGCTACGGAGTAACATGGATGTCAGATTTCGAGAGGCAGGATTCAAAGGACCGCTGTGGGAAGAAATTTCTTCTGGAATGGCTAGCCTTGGATTCCAGAGAAGTGCTAAGAGATGCAAAGAAAAGTGGGAGAATATCAACAAATATTTCAGGAAGACCAAGGATAACATTAAAAAACGCCCCCAAAATGCCAAGACATGTCCTTACTTTCATCAGCTTAACCTTCTATATAGTGATAATCCTAAGTCGAGCAAGACAGATCAATCTCATTCCTCTGATGATCAAGCTGATCCAGACCATGAGAACATCAATGATAATAATAATGGAGAAGATGATGAACATGCTCAAACTAGGCCATCTGATCATTCAGAACTTCTAGCAGCTATGATCCATGGAGATCAGGCAGGGCAAACATCCTTGGCAAAAACCAATGCTGCAACTACTACTGTGCACGACCATTTCTTCCGAGATGACCATCCTGTTGATCAAGTACAGAAACGCTTCAAAACAAGACAGCATCTGCCTACTGGAATCCAAGCCTCAAATGCAATGGGCATCATCACTGAAAGTGGATCCAAACCCAATGCCTTTGAAGACACATTCTCAGGCAATATTAAAAAGGGCAGCACAATGGACAGTCTGGTAAAAGAAATGCTAGAGATGCAGCAGCAGAAATTTCTTGATGCTTTTGAGAGGAGAGAACATGAACAAGAACAACAGCAAAGCATGAGTAGTGAAGAGAGACATCACCACCACCACCCACAAGAAACAACACAGGATGATCGTTCACAGTCTGCTCTGATGGCTTTGGTGCATAAACTCACTGTGAATGCTGCGGATTATGCAACGGGTTGA___ATATTTGAATGTACAGGACTCCTTCCTATGTACCATATGTGTTCTCTTATGTGCTATTAGGTTGCCATCGGAAGTATGTTCAGTGTATGAAGGCGGATCAACTCACAAGGTGAGTCTCGGTAGGCTAAAGCAAAGTGCACTTCATATATTATGTAGTTGTTTGTTCAGTTTAAAATTTCCATCAGCGAGAGTCAAATCCTTTTGGCCTGCTGCATAATTTTTATCAGTTAAATTCTTTGAGACCATAGATATTTAATATACTGAACTGTATAGTTGTAACTTTATCTATGCAATAATGAAAG

Fln Alignment:

Contig4747___TPLQNPSPPKTLEQVNRKKRKRK---------HLASITAFFESLVKQVMGHQEELHRKFLEAIDRREQERLKREETWKRQEMARLNRETELRAQEHALASSREAAIVAFLQKITGQNLNLXXXXXXXXXXXXXXXXXQQDQDKLATDTAM------PDPNCKRWPKPEVQSLIRLRSNMDVRFREAGFKGPLWEEISSGMASLGFQRSAKRCKEKWENINKYFRKTKDNIKKRPQNAKTCPYFHQL
A9NRE1_______________TPSNFPTDDEMTEEGSPAGKRRKTTPRGLTATDLDAVRELLESLVNR----QQRFFVDLLESIERKEEIR----------ERIRQEKEEKWRAEERAQRCLFNNAMIVLAKKLVDGDPGFCGFEEFKPKPTTGGSE-QTDHDAGAAAITVVGGGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSES----PYYAEL

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
229	66	33			0.997452
237	66			33	0.997452
238	66		33		0.997452
240	66	33			0.997452
241	66			33	0.997452
244		33		66	0.997452
248	66	33			0.997452
249	33		66		0.997452
278	75			25	1.0
454	88	11			0.923564
455	88		11		0.923564
458			88	11	0.923564
460	11		88		0.923564
462	88	11			0.923564
465	88			11	0.923564
468	88	11			0.923564
469	44		44	11	1.0
472	88	11			0.923564
823		20	80		0.995493
1098	80		20		0.999996
1099	80			20	0.999996
1100		20	80		0.999996
1101		80	20		0.999996
1105		20		80	0.999996
1107		80		20	0.999996
1108	80			20	0.999996
1110	80		20		0.999996
1112		80		20	0.999996
1113	80		20		0.999996
1115		20	80		0.999996
1119		20	80		0.999996
1168	83	16			0.999991
1173	83			16	0.999991
1182		16		83	0.999991
1269		75		25	1.0
1346		28	71		1.0
1348	71			28	1.0
1349	71		28		1.0
1350	28			71	1.0
1353	71			28	1.0
1354	71			28	1.0
1356		71	28		1.0
1360		71		28	1.0
1361	71	28			1.0
1363	71	28			1.0
1365	14	28	57		1.0
1366	28	71			1.0
1376		85		14	0.993533
1503	16		83		0.994512
1594	83		16		0.994512
1595			83	16	0.994512
1596		16	83		0.994512
1597	83		16		0.994512
1603		16	83		0.994512
1606		83	16		0.994512
1607	83		16		0.994512
1609	83			16	0.994512
1614	16		83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1552	1564	CAC CAC CAC CAC C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain