SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4722

Length: 446 nt

UniGene Fasta

>uagpf_v2_unigene4722
CGTCGTGACCTTGGCTGTCACTCAGGTTATGCCGTCGTGACCTTGGCTGTCACTGAAGATGGAGTGTTATATCCTCTTGAAAAAAGCTTTTTCTTCTTGCCTAAACCCCCGACACTTATTCTTCACGAGGAGATTGAATATCTTGAGTTTGAGAGACATGGAGCTGCTGGTACGAGTAGTATGTCTTCACACTATTTTGATCTTATTATAAAGCTGAAGAGTGAGCAAGAGCATCAGTTCCGAAATATTCAGCGGAATGAATATCACAATCTTTTCAGCTTCATAAACACCAAGGGTTTAAAAATCATCAATTTAGGAGCTACAGAAACTATTGGTGGAGTTGCAGCGGCTCTTCAGAATTCTGACGATGAAGCTGTAGATCCACATCTTGAGCGAATAAAAAATCTACGTGATGGTGGAGCCGGTGATGAAGACAGCGACGAAGA

Ace file of the UniGene uagpf_v2_unigene4722

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2189	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb\|CAA66480.1\| transcription factor [Vicia faba var. minor]	-	-	66%
FL-Next	sp=FACT complex subunit SSRP1-B; Oryza sativa subsp. japonica (Rice).	-	-	69%
Blast2go	fact complex subunit ssrp1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	DNA repair	GO:0006281	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA replication	GO:0006260	Biological Process	84%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	nuclear euchromatin	GO:0005719	Cellular Component	84%
Blast2go	FACT complex	GO:0035101	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000910	-	0.0	-
Sma3	Structure-specific recognition protein	IPR000969	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q65WY8

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 148 - 640

Fln protein: RRDLGCHSGYAVVTLAVTEDGVLYPLEKSFFFLPKPPTLILHEEIEYLEFERHGAAGTSSMSSHYFDLIIKLKSEQEHQFRNIQRNEYHNLFSFINTKGLKIINLGATETIGGVAAALQNSDDEAVDPHLERIKNLRDGGAGDEDSDE

Protein Length: 149

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTATGCCGTCGTGACCTTGGCTGTCACTGAAGATGGAGTGTTATATCCTCTTGAAAAAAGCTTTTTCTTCTTGCCTAAACCCCCGACACTTATTCTTCACGAGGAGATTGAATATCTTGAGTTTGAGAGACATGGAGCTGCTGGTACGAGTAGTATGTCTTCACACTATTTTGATCTTATTATAAAGCTGAAGAGTGAGCAAGAGCATCAGTTCCGAAATATTCAGCGGAATGAATATCACAATCTTTTCAGCTTCATAAACACCAAGGGTTTAAAAATCATCAATTTAGGAGCTACAGAAACTATTGGTGGAGTTGCAGCGGCTCTTCAGAATTCTGACGATGAAGCTGTAGATCCACATCTTGAGCGAATAAAAAATCTACGTGATGGTGGAGCCGGTGATGAAGACAGCGACGAAGA

Fln Alignment:

Contig4722___CHSGYAVVTLAVTEDGVLYPLEKSFFFLPKPPTLILHEEIEYLEFERHGAAGTSSMSSHYFDLIIKLKSEQEHQFRNIQRNEYHNLFSFINTKGLKIINLG-ATETIGGVAAALQNSDDEAVDPHLERIKNLRDGGAGDEDSDE
Q65WY8_______________CQDGYAVKSSLKAEDGLLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGG-ASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRN----QTGDDESDE

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
48		25		75	0.996473
50	25		75		0.996473
51	25			75	0.996473
52		75	25		0.996473
53	50		25		0.995533
54		80	20		0.995493
56		40	60		1.0
58	80	20			0.995493
59		20	80		0.995493
60	66		16	16	0.988813
63	16		83		0.994512
64	66	16			0.988813
65		33	66		1.0
67			83	16	0.994512
68			16	83	0.994512
69		16	16	66	0.988813
70	83	16			0.994512
72	66	16	16		0.988813
79	16			83	0.994512
191	46		53		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain