SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4613

Length: 2146 nt

UniGene Fasta

>uagpf_v2_unigene4613
CCGTCGTGACCTTGGCTGTCACTCGATTTCTCTTGCTGGAACCGGCGGAGAATCCAGCATTTTTTCGCAAAAATCTTAAAAGAATCGTCAATTTCTATTCAAAGCTGTGCAAAATGTTCTTATCTGTCAGTCGAGGCCAAATCTTACGGGAAAAGGCGGATTCGGGCTTTCTTGCAGTTTTTTCGGGCATTTTGGTGTCTTTTGCTGGCAAAAGTATCCAAGATTGAGCTGGTCGGCTTATTTAGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAGATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACCACTTCCTTTAGGTCAACCTGTACAGAGAAGGGTTGAGAAACAGTGTGCACATTTCTACTCTGTTACTATAACAGAAAGGGAGGCAGAGGCAGGCCTAGTAGTGCGAGTGGTGTCCTCTGATAAAAGCAAATTCAAGTTGCTGTATTTTGAGCACGAAGAGAATGGAGGGTTAAGCCTTGCTCTACAGGAAGACAGTGCAAAGACGGGGAAAATTACATCAGCTGGGATGTACTTCCTACGCTTCCAAGTTTATCATCTAGACACCACTGCAAATGCAATGGCAATTTCCAAGGATCCAGACGCTGCATTTTTTAAGAAGCTTGATGGTTTTCAGCCATGTGAATTGACTGAGCTAAAGGCTGGCACACATGTCTTTGCTGTTTATGGTGATAACTTCTTTAAAAGTGCTAGTTATACAATAGAAGCTATTTGTGCTGGACCCTTTTCTGAAGCAAAAGAGAAACTCCGTGAGGTGGAGGCCCAAATTTTGACTAAACGTATTGAGCTTTCCAAGTTTGAAGCGGAATATACGGAGGTTTTAGCTCAAGTTTACGGAAATGACTGCTAGATACTCTGAAGAAATGCAAGTTATAGATGGACTTCTCAAGACAAGGGAAGCTATCCATTCCTCGTATACTTCAGTTCCAACACTAAAGAGGACCTTGAGTGGTAGCAAATTCAAGGGGTCAAATAAGGAAGCTAAGGGAGAAGCTGGCATTCACAGCAGAGAATCAAAGCAAGCTAACAGGGACAGGTCTAAAAAGAAATGGTTCAATATCCATCTTAAAGTTGATAAAAGAAAGGCGTGCTGAATAGAGGCAAATCTCTATCCATTGGTGTTATGATGACTTGTTCAAAAGAGGGGGTATCCTTTCTCATCCAGAGGGAGTGGTCAAAACGTCAACCATGCTCTTCTTATATTTCACTCTGTTCAGCAGTAAAATATTCCTCTGTTTGGATGACCTCAGGTAAGTCGACAGGGCATGGATATTCTGAGTATGGTTTTTTTGAAGAAATCTATACTAAGCAGCATATGAAGTTGTTGCTTTTGAGGATTAGTGCCTGTTTGTTTTTGTTCCATTCTTGTGCCGGCTGGCCATTGTATTATGTTCTCTTAATGTAACTCTTCTAAGAGGTATTCAAGGGAGGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTATCTTATTTTTCGTACTACTGTTGATTTACTGCAAGATTAACCTCGGCAACTTACAATTCATATTATGCTTTGTTTTTGCTCAATATATGAATTGCAAGTCATCAGAAAAAAGACGAACAAGGACAAAGGTCACATAATAGAAGAACAAGTTATTTTTACTTAC

Ace file of the UniGene uagpf_v2_unigene4613

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3294	53/60
SustainPine v2.0	sp_v2.0_unigene66245	2/60

Source	Descriptions	Term	Type	Identity
AutoFact	Altered response to gravity (Arg1), plant, putative n=1 Tax=Ricinus communis RepID=B9S2J6_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	altered response to gravity	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	80%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	80%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	80%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	80%
Blast2go	Golgi stack	GO:0005795	Cellular Component	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: your sequence is longer than subject: 331 - 182

Fln protein: MPGASGAFRGENGVDEFRRDPYEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAEQFKEITYSYGILSDPVKRRQYDAAGFQAIENENQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATILEEALNGAVPIRPLPLGQPVQRRVEKQCAHFYSVTITEREAEAGLVVRVVSSDKSKFKLLYFEHEENGGLSLALQEDSAKTGKITSAGMYFLRFQVYHLDTTANAMAISKDPDAAFFKKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEAICAGPFSEAKEKLREVEAQILTKRIELSKFEAEYTEVLAQVYGNDC*

Protein Length: 332

Fln nts: CCGTCGTGACCTTGGCTGTCACTCGATTTCTCTTGCTGGAACCGGCGGAGAATCCAGCATTTTTTCGCAAAAATCTTAAAAGAATCGTCAATTTCTATTCAAAGCTGTGCAAAATGTTCTTATCTGTCAGTCGAGGCCAAATCTTACGGGAAAAGGCGGATTCGGGCTTTCTTGCAGTTTTTTCGGGCATTTTGGTGTCTTTTGCTGGCAAAAGTATCCAAGATTGAGCTGGTCGGCTTATTTAGTTGAAGAAACGAAGGAAAACTCGCAGCGGAGCATACTCTTCTTGGATATTTGGATATTTGCACCGGTTCAAG_-_ATGCCTGGGGCATCAGGTGCCTTTAGAGGAGAAAATGGAGTTGATGAATTTCGGCGGGATCCGTATGAGGTGCTGGGTGTCTCTCGTGACGCATCTGATCAGGAGATCAAGTCATCTTATCGTAAGAAGGCTTTAAAGTTTCATCCAGATAAGAATGCCAACAACCCTGAAGCAGCTGAACAGTTCAAGGAAATAACTTATTCTTATGGTATTCTGTCGGATCCAGTAAAGCGCCGTCAATATGATGCAGCCGGTTTTCAGGCAATTGAAAACGAGAATCAAGAATTGGAATTGGATCTGTCTAGCCTGGGAGCAGTGAATACCATGTTTGCTGCTCTTTTCAGCAAGCTTGGAGTTCCAATCAAGACAACAGTATCGGCAACTATTTTGGAAGAGGCTTTAAATGGAGCAGTTCCAATCAGACCACTTCCTTTAGGTCAACCTGTACAGAGAAGGGTTGAGAAACAGTGTGCACATTTCTACTCTGTTACTATAACAGAAAGGGAGGCAGAGGCAGGCCTAGTAGTGCGAGTGGTGTCCTCTGATAAAAGCAAATTCAAGTTGCTGTATTTTGAGCACGAAGAGAATGGAGGGTTAAGCCTTGCTCTACAGGAAGACAGTGCAAAGACGGGGAAAATTACATCAGCTGGGATGTACTTCCTACGCTTCCAAGTTTATCATCTAGACACCACTGCAAATGCAATGGCAATTTCCAAGGATCCAGACGCTGCATTTTTTAAGAAGCTTGATGGTTTTCAGCCATGTGAATTGACTGAGCTAAAGGCTGGCACACATGTCTTTGCTGTTTATGGTGATAACTTCTTTAAAAGTGCTAGTTATACAATAGAAGCTATTTGTGCTGGACCCTTTTCTGAAGCAAAAGAGAAACTCCGTGAGGTGGAGGCCCAAATTTTGACTAAACGTATTGAGCTTTCCAAGTTTGAAGCGGAATATACGGAGGTTTTAGCTCAAGTTTACGGAAATGACTGCTAG___ATACTCTGAAGAAATGCAAGTTATAGATGGACTTCTCAAGACAAGGGAAGCTATCCATTCCTCGTATACTTCAGTTCCAACACTAAAGAGGACCTTGAGTGGTAGCAAATTCAAGGGGTCAAATAAGGAAGCTAAGGGAGAAGCTGGCATTCACAGCAGAGAATCAAAGCAAGCTAACAGGGACAGGTCTAAAAAGAAATGGTTCAATATCCATCTTAAAGTTGATAAAAGAAAGGCGTGCTGAATAGAGGCAAATCTCTATCCATTGGTGTTATGATGACTTGTTCAAAAGAGGGGGTATCCTTTCTCATCCAGAGGGAGTGGTCAAAACGTCAACCATGCTCTTCTTATATTTCACTCTGTTCAGCAGTAAAATATTCCTCTGTTTGGATGACCTCAGGTAAGTCGACAGGGCATGGATATTCTGAGTATGGTTTTTTTGAAGAAATCTATACTAAGCAGCATATGAAGTTGTTGCTTTTGAGGATTAGTGCCTGTTTGTTTTTGTTCCATTCTTGTGCCGGCTGGCCATTGTATTATGTTCTCTTAATGTAACTCTTCTAAGAGGTATTCAAGGGAGGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTGGCTTGTGTCCCTTCTCCACATTCAATGCAGAGATTAAATCAGTGTATCTTATTTTTCGTACTACTGTTGATTTACTGCAAGATTAACCTCGGCAACTTACAATTCATATTATGCTTTGTTTTTGCTCAATATATGAATTGCAAGTCATCAGAAAAAAGACGAACAAGGACAAAGGTCACATAATAGAAGAACAAGTTATTTTTACTTAC

Fln Alignment:

Contig4613___DPYEVLGVSRDASDQEIKSSYRKKALKFHPDKNANNPEAAE-QFKEITYSYGILSDPVKRRQYDAAGFQAIENE
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQ

SNPs (tot: 123)

Position	A %	C %	G %	T %	Probability
154	83	16			0.994512
156			83	16	0.994512
161		16		83	0.994512
162		16		83	0.994512
163		83		16	0.994512
164			83	16	0.994512
169			20	80	0.995493
172		25		75	0.996473
174		25	75		0.996473
175	33	66			0.997452
247		40		60	1.0
249	60			40	1.0
250	60	40			1.0
252	60			40	1.0
253	60		40		1.0
256		40	60		1.0
257	60			40	1.0
258	60			40	1.0
261	60	40			1.0
262	60			40	1.0
263	60		40		1.0
264	60			40	1.0
266	40			60	1.0
268			60	40	1.0
271	90	10			0.90298
554			90	10	0.90298
557	90		10		0.90298
558	90	10			0.90298
559	10			90	0.90298
560	90		10		0.90298
574		11		88	0.923564
575	11			88	0.923564
576		11		88	0.923564
577		88	11		0.923564
579		11	88		0.923564
595	87	12			0.992554
596	87			12	0.992554
599	87		12		0.992554
600	87	12			0.992554
794	66		33		1.0
796		33		66	1.0
797			33	66	1.0
798		66		33	1.0
799			33	66	1.0
802		50		50	1.0
803		50		50	1.0
805			83	16	0.994512
806	16		33	50	1.0
811	66		33		1.0
813	66	33			1.0
816	66			33	1.0
817		33	66		1.0
821			83	16	0.994512
1032		83	16		0.994512
1033	83			16	0.994512
1034	83	16			0.994512
1043			83	16	0.994512
1044	83			16	0.994512
1045		83	16		0.994512
1053		16		83	0.994512
1054	16			83	0.994512
1257	66	33			0.997452
1261			33	66	0.997452
1265	66	33			0.997452
1266		33	66		0.997452
1267		66		33	0.997452
1268		40	40	20	1.0
1270	40		20	40	1.0
1271	40	60			1.0
1273	40		60		1.0
1275		20	40		1.0
1277		40	60		1.0
1278		40	40	20	1.0
1279		20	40	40	1.0
1280	60			40	1.0
1283		40		60	1.0
1285			40	60	1.0
1287	60	40			1.0
1288	40		60		1.0
1352	85		14		0.993533
1353	85			14	0.993533
1357	85	14			0.993533
1358	85			14	0.993533
1359			85	14	0.993533
1360		12	87		0.992554
1362	75	12		12	0.975346
1363	75	12		12	0.975346
1365		75		12	0.975346
1366		12		87	0.992554
1367	87		12		0.992554
1368	12	12		75	0.975346
1369		87		12	0.992554
1371	87			12	0.992554
1373			12	87	0.992554
1374		87	12		0.992554
1381		12		87	0.992554
1414	87	12			0.992554
1417		12	87		0.992554
1420	87		12		0.992554
1421	12		87		0.992554
1423	87	12			0.992554
1424	87			12	0.992554
1425	87			12	0.992554
1426			12	87	0.992554
1427			12	87	0.992554
1429	87			12	0.992554
1430	87		12		0.992554
1431			87	12	0.992554
1432		12	87		0.992554
1433	12		87		0.992554
1434		12	87		0.992554
1498		12	87		0.992554
1500	87			12	0.992554
1502	87		12		0.992554
1503			87	12	0.992554
1505	12			87	0.992554
1512	81			18	0.999994
1514	63	18			0.999997
1626	12	87			0.992554
1941	14		85		0.993533
2095	25			75	0.996473
2096	25	25		25	0.997389
2097	25	75			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain