SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4497

Length: 848 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4497

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7741	16/28
SustainPine v2.0	sp_v2.0_unigene60381	11/28

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RBE5_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	glucan endo- -beta-glucosidase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	X8	IPR012946	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX81

Fln msg: Separated hits, possible frame ERROR between 158 and 169, and possible frame ERROR between 417 and 419, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 211 - 491

Fln protein: S*PWLSLVDIVVAETGWPSAGDPTETGVSLQNAIAYNGNLIKHVTSMTWCPxxxxxYIQTYIFALFNEDLKPGPTSEHNYGLFKVDMTMAYDVGLLQSPSAAPSSPAPRTGGPVTAPPTGKVWCIAKPGAEEQTLEANxCNYVCGQGIDCRPIQPGGPCYSPNTVAGHAAYAMNAYYQTAGRNNWNCDFAQTGTLTSTDPSYGACVYPTV*

Protein Length: 212

Fln nts: CGTCGTGACCTTGGCTGTCACTTGTTGATATAGTGGTGGCTGAAACAGGATGGCCATCTGCGGGGGATCCTACAGAGACAGGGGTGAGCTTACAGAATGCAATTGCTTACAATGGCAACCTGATCAAGCATGTGACCTCCATGACGTGGTGCCCTTTxxxxxxxxxxxxGTACATTCAGACCTATATTTTTGCCCTCTTTAATGAGGATCTGAAGCCAGGACCAACTTCGGAACACAATTATGGGCTGTTTAAAGTTGATATGACAATGGCTTATGATGTGGGTTTGCTGCAATCGCCGAGTGCAGCTCCATCCTCTCCTGCTCCACGCACTGGAGGGCCTGTGACAGCTCCTCCTACAGGGAAAGTTTGGTGCATTGCCAAGCCGGGCGCCGAAGAGCAAACTTTGGAGGCAAATxxxTGTAACTATGTTTGTGGACAGGGAATTGACTGTAGGCCTATTCAACCAGGAGGTCCTTGCTATTCACCAAATACAGTGGCAGGCCATGCTGCCTATGCCATGAACGCATACTATCAAACTGCGGGTCGGAACAATTGGAATTGTGATTTTGCGCAGACTGGAACTCTTACCTCCACAGATCCAAGCTACGGGGCCTGCGTGTACCCGACCGTCTAAGATATGAATCAATCAATCAATCCTAGTCTTTTCTATTCGACTTGTTGTTCGGTATATATTTTGCAACCTGTCATTTCATATGAGTGAGATGTATGAGGTACCTATTTTCGAAGTTGTCATAGCATATGCATAAGATGTGAGGTGTTACATTCTCCCCTTTTAACTCGTTACTGTGAACGTGTCTTTCATTTCACAGAATTTGTGAATGGTAGTGTTA

Fln Alignment:

Contig4497___VDIVVAETGWPSAGDPTETGVSLQNAIAYNGNLIKHVTSMTWCPLxxxxYIQTYIFALFNEDLKPGPTSEHNYGLFKVDMTMAYDVGLLQ---------------------XXXXXXXXXXXRTGGPVTAPPTGKVWCIAKPGAEEQTLEANLxNYVCGQGIDCRPIQPGGPCYSPNTVAGHAAYAMNAYYQTAGRNNWNCDFAQTGTLTSTDPSYGACVYPTV
A9NX81_______________IDIVVAETGWPSVGDPTEAGASLQNAIAYNGNLIKHVTSMAGTPLxxxxYIHTYIFSLFNEDLKPGPTSERNYGLFKADMTMAYDVGLLQSPSAGPSPAPRTGGPVTATPPRAGGSVTAPPTRTGGPVTAPPTGKVWCITKPGADEKTLEANLxNYACGQGIDCRPIQPGGPCYSPNTVACHAAYAMNAYYQAAGRNSWNCDFGQTGTLTSTDPSYGGCVYQTV

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
201	66	33			0.997452
202	66		33		0.997452
204		33	66		0.997452
205	66		33		0.997452
206			66	33	0.997452
209		33		66	0.997452
214	66			33	0.997452
216		66	33		0.997452
218	66			33	0.997452
220			66	33	0.997452
221	66	33			0.997452
222	33	66			0.997452
225	66	33			0.997452
228			14	85	0.993533
234	85	14			0.993533
236	85			14	0.993533
237		85		14	0.993533
238	85		14		0.993533
239	85		14		0.993533
240		14		85	0.993533
242	85		14		0.993533
245		14	85		0.993533
246	14		85		0.993533
249	14		85		0.993533
287		12		87	0.992554
289		87		12	0.992554
290		12		87	0.992554
292		87		12	0.992554
293	87		12		0.992554
295		12		87	0.992554
299		87	12		0.992554
302	87			12	0.992554
308			87	12	0.992554
335		11	88		0.923564
337	88			11	0.923564
339	11		88		0.923564
340		11	88		0.923564
342		88		11	0.923564
347	88			11	0.923564
354	12	87			0.992554
450	85		14		0.993533
466	83		16		0.999991
660		35	64		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
638	653	AATC AATC AATC AATC	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain