SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4481

Length: 511 nt

UniGene Fasta

>uagpf_v2_unigene4481
ATATATATGACTTGCAAACTGGAGAATGGGTTACAAACTTTAGAGCCGCTTATGACACTGTGAATGGATTTTGCTTTCATCCATCCCTTCCTTTAGCTGTGTCTTCTTCTGGGCATCGCCGATTTTGCATACCGGGTGATGATGAAGAGAGTTTAAAATTACGTAGTTGAGGAGAACTATGCTTCAGTATGGAGTTTCTCGTGTACATGGGTTGGAGGACATGGGTCTGATGTTGACCATCAAGATAATAACAAAGAAGAAGCTCCAGAGTATGTGAATGTTCAAGGTGAAAGTAAAGATGCAGATTCAACAAAAACTGAGGATGTTATTGAAGTTTCAGTTGATTTTGATAACACAAAGGAACAAGAGAGATAAGAGAATTGATGCTTGAGCATCATACTTTTTATTCTTGTCACCTGTAATTCTGTAACTTTAATTAACTTAATGTTTTAGATGTCCCATTCTTTTTATCAATCTTTGTTTAAATTCTCCCGCCCATTTCCATAGGTTA

Ace file of the UniGene uagpf_v2_unigene4481

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6420	4/8
SustainPine v2.0	sp_v2.0_unigene69014	3/8
SustainPine v2.0	sp_v2.0_unigene69567	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAN13056.1\| unknown protein [Arabidopsis thaliana] gb\|AEE84462.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=WD40-like; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	61%
Blast2go	guanine nucleotide-binding protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	78%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3		IPR013596	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Alkaline phosphatase, active site	IPR018299	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: Q2HTZ7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence, your sequence is shorter than subject: 56 - 242

Fln protein: IYDLQTGEWVTNFRAAYDTVNGFCFHPSLPLAVSSSGHRRFCIPGDDEESLKLRS*

Protein Length: 57

Fln nts: ATATATATGACTTGCAAACTGGAGAATGGGTTACAAACTTTAGAGCCGCTTATGACACTGTGAATGGATTTTGCTTTCATCCATCCCTTCCTTTAGCTGTGTCTTCTTCTGGGCATCGCCGATTTTGCATACCGGGTGATGATGAAGAGAGTTTAAAATTACGTAGTTGA___GGAGAACTATGCTTCAGTATGGAGTTTCTCGTGTACATGGGTTGGAGGACATGGGTCTGATGTTGACCATCAAGATAATAACAAAGAAGAAGCTCCAGAGTATGTGAATGTTCAAGGTGAAAGTAAAGATGCAGATTCAACAAAAACTGAGGATGTTATTGAAGTTTCAGTTGATTTTGATAACACAAAGGAACAAGAGAGATAAGAGAATTGATGCTTGAGCATCATACTTTTTATTCTTGTCACCTGTAATTCTGTAACTTTAATTAACTTAATGTTTTAGATGTCCCATTCTTTTTATCAATCTTTGTTTAAATTCTCCCGCCCATTTCCATAGGTTA

Fln Alignment:

Contig4481___IYDLQTGEWVTNFRAAYDTVNGFCFHPSLPLAVSSSGHRRFCIPGDDEESLKLRS*GELCFSMEFLVY
Q2HTZ7_______________IYDLQTGQWVSSFEAAQDTVNSFSFHPFLPHAVSSSGHRRFVIPDENDEDLCL-SGRENCVSVWSFCY

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
150	66	33			0.997452
154			33	66	0.997452
156	66		33		0.997452
158	66	33			0.997452
159	66	33			0.997452
162	50	25	25		0.995533
163		25	50		1.0
164		50	25	25	0.995533
165		25		50	1.0
168		25	25		1.0
170		50	50		1.0
171		25		75	0.996473
172		25		75	0.996473
173	14		71	14	0.984337
174	85		14		0.993533
176		14	85		0.993533
177	85			14	0.993533
179	85	14			0.993533
183	85	14			0.993533
184	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain