SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4452

Length: 596 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4452

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14624	9/17
SustainPine v2.0	sp_v2.0_unigene27155	7/17

Source	Descriptions	Term	Type	Identity
AutoFact	transcription initiation factor IIB-2 [Arabidopsis thaliana] sp\|Q9SS44.1\|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName: Full=General transcription factor TFIIB-2; Short=AtTFIIB2 gb\|AAF02810.1\|AC009400_6 transcription initiation	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	transcription initiation factor iib	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	80%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3		IPR006670	-	-
Sma3	Zinc finger, TFIIB-type	IPR013137	-	-
Sma3	Transcription factor TFIIB, cyclin-related	IPR013150	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
103	75	25			0.996473
106		25		75	0.996473
107	75		25		0.996473
111	25	75			0.996473
112		25		75	0.996473
113	75	25			0.996473
114	75			25	0.996473
115	75			25	0.996473
116	75		25		0.996473
119	75			25	0.996473
120	75		25		0.996473
122		25		75	0.996473
123	25			75	0.996473
126		25	75		0.996473
128		20		80	0.995493
131		20		80	0.995493
136	20		80		0.995493
137		20		80	0.995493
138		20	80		0.995493
143	66	16			0.988813
145	66	16		16	0.988813
146		16	66	16	0.988813
149		83	16		0.994512
152	83	16			0.994512
153	83			16	0.994512
156	83			16	0.994512
158	83			16	0.994512
159	83	16			0.994512
165	16			83	0.994512
172	85	14			0.993533
175		14		85	0.993533
176	85		14		0.993533
178			14	85	0.993533
179	14			85	0.993533
184	85			14	0.993533
187		85	14		0.993533
190			85	14	0.993533
192	85			14	0.993533
193	85	14			0.993533
195		14		85	0.993533
197		14	85		0.993533
198	14	85			0.993533
506		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain