SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4429

Length: 549 nt

UniGene Fasta

>uagpf_v2_unigene4429
CGTCGTGACCTTGGCTGTCACTCAGATTTGCCCTCCAGAAGCTGTACTAGATACAGCAAAATTTTTTCCTTCGCATTTGGTTACTTACAAGCTCTTTGGTGGAGAGAATGATATTCATTATGGTCACTATGATCTTGTTGGGGGACGTCTGGCAGCTCATGATGTATATCCCTGCATTATTGAATTCCTTAGCAATCATGACAAATTGGAGATCAGTAACTAGTCAGAAAAAGGTGGGATTTGTTTTCGAAAGGTTATTTGATAATGAAGGAATGAGCTGAAGTAAAAAATGTGTTATGATGAATGATTCATTGATTAGTAGTGATCAACGAAGTGTGTTCAATATTAAAAACTGCAAAAATCCCATGTAAAACAATATGCGGGGTTTTCAACCTTTTAGTGACTATGTTGTATGCAACTATCCAAGAGATTTCTGAGAAGTCGTGCAAGCATTTGTAGATTGCAGAAAGCTGAAATTCTCGTAAAATATTATGCTGGAAGTTTTATGATGTTCAAATACAAGATCTGGAGTTTGGAAATTTGCAGCAA

Ace file of the UniGene uagpf_v2_unigene4429

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9003	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SJW6_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein P0034C09.29; Oryza sativa subsp. japonica (Rice).	-	-	68%
Blast2go	and hydrolase domain-containing protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	80%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Nematode insulin-related peptide, beta type	IPR003235	-	-
Sma3	Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070	IPR016969	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q5N7R5

Fln msg: your sequence is shorter than subject: 74 - 489

Fln protein: VVTLAVTQICPPEAVLDTAKFFPSHLVTYKLFGGENDIHYGHYDLVGGRLAAHDVYPCIIEFLSNHDKLEISN*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTTGCCCTCCAGAAGCTGTACTAGATACAGCAAAATTTTTTCCTTCGCATTTGGTTACTTACAAGCTCTTTGGTGGAGAGAATGATATTCATTATGGTCACTATGATCTTGTTGGGGGACGTCTGGCAGCTCATGATGTATATCCCTGCATTATTGAATTCCTTAGCAATCATGACAAATTGGAGATCAGTAACTAG___TCAGAAAAAGGTGGGATTTGTTTTCGAAAGGTTATTTGATAATGAAGGAATGAGCTGAAGTAAAAAATGTGTTATGATGAATGATTCATTGATTAGTAGTGATCAACGAAGTGTGTTCAATATTAAAAACTGCAAAAATCCCATGTAAAACAATATGCGGGGTTTTCAACCTTTTAGTGACTATGTTGTATGCAACTATCCAAGAGATTTCTGAGAAGTCGTGCAAGCATTTGTAGATTGCAGAAAGCTGAAATTCTCGTAAAATATTATGCTGGAAGTTTTATGATGTTCAAATACAAGATCTGGAGTTTGGAAATTTGCAGCAA

Fln Alignment:

Contig4429___ICPPEAVLDTAKFFPSHLVTYKLFGGENDIHYGHYDLVGGRLAAHDVYPCIIEFLSNHDKL
Q5N7R5_______________ICPPEAVYETVKLIPQHLVTYKVFGKPEGPHYAHYDLVGGRKAVHEVYPCIIEFLSQHDEV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
111	66	33			0.997452
112	66		33		0.997452
114		33	66		0.997452
115	66		33		0.997452
117	66		33		0.997452
118	33			66	0.997452
119		33		66	0.997452
121	66			33	0.997452
123			33	66	0.997452
124	66		33		0.997452
126		33		66	0.997452
127			66	33	0.997452
252		14		85	0.993533
253			14	85	0.993533
257	88			11	0.923564
258	88		11		0.923564
260		11	88		0.923564
261		11	88		0.923564
264	88		11		0.923564
265			11	88	0.923564
266		11		88	0.923564
269	88			11	0.923564
270		11		88	0.923564
272	88	11			0.923564
274		11	88		0.923564
492	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain