SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4413

Length: 943 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4413

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10937	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein binding	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
110		33		66	0.997452
112		66		33	0.997452
113	66	33			0.997452
115	66			33	0.997452
117	33			66	0.997452
118		33	66		0.997452
121	66			33	0.997452
123	66		33		0.997452
124		33	66		0.997452
126		66	33		0.997452
128		33	66		0.997452
131		33		66	0.997452
133		33	66		0.997452
205	66		33		0.997452
263		20	80		0.995493
266		20		80	0.995493
275	80			20	0.995493
276	80			20	0.995493
278	80		20		0.995493
286	75			25	0.996473
287	75	25			0.996473
292			75	25	0.996473
530		16	83		0.994512
532	83			16	0.994512
533		16		83	0.994512
534	83		16		0.994512
537	16			83	0.994512
538	83	16			0.994512
543			16	83	0.994512
544		16	83		0.994512
545	83			16	0.994512
546	83		16		0.994512
548		16		83	0.994512
549	16		83		0.994512
552		16	83		0.994512
553	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain