SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4370

Length: 596 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4370

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18174	7/11
SustainPine v2.0	sp_v2.0_unigene45619	4/11

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SEX4_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	light-regulated zinc finger protein 1	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	62%
Blast2go	regulation of photomorphogenesis	GO:0010099	Biological Process	62%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	62%
Blast2go	chloroplast organization	GO:0009658	Biological Process	62%
Blast2go	shade avoidance	GO:0009641	Biological Process	62%
Blast2go	nuclear speck	GO:0016607	Cellular Component	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, B-box	IPR000315	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
109	33	66			0.997452
111	33			66	0.997452
112	33	66			0.997452
115	33		66		0.997452
117		66	33		0.997452
118	33	66			0.997452
122		33	66		0.997452
123	33	66			0.997452
128		66		33	0.997452
131	33			33	0.997753
133	33			33	0.997753
136	33		66		0.997452
146			25	75	0.996473
151		75		25	0.996473
153	75		25		0.996473
154		25	75		0.996473
155	75			25	0.996473
162	75	25			0.996473
177			12	87	0.992554
179	75	12	12		0.975346
181	75	12			0.975346
183	75		12		0.975346
184	87		12		0.992554
185		12		87	0.992554
186		25	75		1.0
187	87			12	0.992554
188		12		87	0.992554
189			12	87	0.992554
191	12			87	0.992554
196	12			87	0.992554
197		12		87	0.992554
270		90	10		0.90298
271	90			10	0.90298
272		10	90		0.90298
276		10	90		0.90298
277	90	10			0.90298
278			90	10	0.90298
284		90		10	0.90298
286	10	90			0.90298
355	88		11		0.923564
356	88			11	0.923564
360	11			88	0.923564
361		11		88	0.923564
362		11		88	0.923564
367	88		11		0.923564
368	88	11			0.923564
370	88		11		0.923564
515	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain