SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4347

Length: 1285 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4347

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4495	36/37

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	84%
Blast2go	meristem structural organization	GO:0009933	Biological Process	84%
Blast2go	auxin polar transport	GO:0009926	Biological Process	84%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	84%
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	84%
Blast2go	radial pattern formation	GO:0009956	Biological Process	84%
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	84%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%
Blast2go	nuclear pore	GO:0005643	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7U509

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 126 - 896

Fln protein: VVTLAVTS*PWL*LVCPDLVSPHMEHFMRPWCYALQTIRDDIEKEDEIL*GLCAMVRANPSGALSFLVQMCQAIASWHEIRSEDLHTDICQVLHGYKQMIGAAAWEQCMSALQPSVQEKLLKYGI*

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTGATTGGTTTGCCCGGATTTAGTCTCACCGCACATGGAACATTTCATGAGGCCATGGTGTTATGCTCTTCAGACGATTCGTGATGATATTGAGAAAGAGGATGAAATTCTCTGAGGCCTTTGTGCTATGGTGAGGGCAAATCCTTCTGGTGCTTTGAGCTTTCTTGTCCAAATGTGTCAGGCCATTGCCAGCTGGCATGAAATACGGAGTGAGGATTTACACACTGACATATGTCAGGTTCTGCATGGTTACAAGCAGATGATTGGAGCAGCTGCATGGGAACAGTGCATGTCTGCTCTACAGCCTTCAGTGCAAGAGAAGTTGCTGAAGTATGGCATTTAA___AATGTCTGGTAAACAGTTGTGGTGCTACTCTAATTGTCATGTGTTATTGTTCGCTAGGAATTTGTCCTTGGTCTTAACATATTCATGTGTGCCCTTCGCCACATCATGTTAGTGGTTCTTCAAGAGCTCATATGTTCTTTATAGAATTCTCTCCTCTGAAACACCTTGTTCTGTACCCCAGTATTAGATCTTGGGCATAGGATACTGTCTACTTGCAGTTGATATGTGGCGTTGGATGTTCCTTGAAGAGCTTGTTATCAGTCGAGCGTAAGGCTCATGATTCTTGTTTGAATCTGTCTCTATTCTTTTATTTATTATCCCTCCTACTTATACCTGGTTGCTGCTCTAGTAAGCATTTTCGGCAGAGTAAATTTTGAGACAGGCACTGGTGACTGGAGGTAATGCACAAGTAGAAGGTTCTGAAGCAGTACATGTTCCGCATCTATTATCTTTCCCAGGTCTTGTCAACAGGCATCAAAAGGGGCTGTTCTGATTGCATAGGTAACGGGGCATCAAGTCTATGTAACAACATGTGGTTACAATCTGCTTCAGTTTGAAAAATCTTGGTTTTTCCCTTAGCGTGCACCAGGAAGTTGCATCAACAGGAGCTTTGTGATTTAAGCATTCTGTAATTTTGTGGATGTCAGCATTTACAGTACCAGGAGTTGCTGGTTACTTGTACCTTTTGATTAAAGGGAATGATGCATTGCATTGTACCTTCAGCATTAGTTGAGTAGAGACGTGTATAGAAGGGAATATTGCTGATTGCTGGATGTACGCAAGTATGCGTGATTTTACAAGATTAATGAGCTCATTTTTAATATGATGAAATCTGTTCTCAGCAAGTCTGAGATATCATGAAATGATTTCTTTGAAAAACCTTGCATCAATAAGGGTATACATTAG

Fln Alignment:

Contig4347___VCPDLVSPHMEHFMRPWCYALQTIRDDIEKEDEIL*GLCAMVRANPSGALSFLVQMCQAIASWHEIRSEDLHTDICQVLHGYKQMIGAAAWEQCMSALQPSVQEKLLKYGI
D7U509_______________VCPEIVSLHMEHFMQSWCTALSMIRDDIEKEDAFR-GLCAMVRANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWEQCMSALEPPVKDKLSKYQV

SNPs (tot: 102)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997452
27			66	33	0.997452
28	66		33		0.997452
29		66	33		0.997452
30		66	33		0.997452
31	33			66	0.997452
32	33			66	0.997452
34	33		66		1.0
38			33	66	1.0
39		33	66		1.0
41		66		33	0.997452
42			33	66	1.0
43		33	66		1.0
44	66		33		0.997452
133	50	50			1.0
135	50			50	1.0
136		50	50		1.0
143	50	50			1.0
147			50	50	1.0
153	83			16	0.994512
154		50	50		1.0
155	16		50	33	1.0
157	33			16	1.0
159	16			83	0.994512
188		12	87		0.992554
193		12		87	0.992554
201			12	87	0.992554
205	12			87	0.992554
206		12	87		0.992554
360	80	20			0.995493
363		20		80	0.995493
369	80	20			0.995493
370		20	80		0.995493
378	66		33		0.997452
422	50	50			1.0
426			50	50	1.0
428	33		33		1.0
434	33	33		33	1.0
435	33	33		33	1.0
436	33	66			1.0
438		33		66	1.0
440	33		66		1.0
441		33		66	1.0
443		66	33		1.0
444			66	33	1.0
446	33			66	1.0
447	66	33			1.0
448			66	33	1.0
449		33	66		1.0
601			16	83	0.994512
602	83			16	0.994512
604			16	83	0.994512
607	16	83			0.994512
608	83	16			0.994512
609		16	83		0.994512
614			16	83	0.994512
615	83	16			0.994512
619		16	83		0.994512
620	16		83		0.994512
622		16	83		0.994512
623	16			83	0.994512
659		14	85		0.993533
662	85			14	0.993533
668	85		14		0.993533
670		14	85		0.993533
671	87	12			0.992554
672		12	12	75	0.975346
675	12		12	75	0.975346
678	12			87	0.992554
679		12		87	0.992554
680		12		87	0.992554
681			87	12	0.992554
682	87			12	0.992554
683	87		12		0.992554
684			11	88	0.923564
690	11			88	0.923564
818	90	10			0.90298
823	88		11		0.923564
827	11			88	0.923564
830			88	11	0.923564
831		88		11	0.923564
832	88		11		0.923564
833			11	88	0.923564
836	88		11		0.923564
838		11		88	0.923564
843	11			88	0.923564
858	90		10		0.90298
859	90			10	0.90298
861	90			10	0.90298
863	10		90		0.90298
865	90	10			0.90298
867		90		10	0.90298
868	90		10		0.90298
869	90		10		0.90298
870	90	10			0.90298
871	90			10	0.90298
873			90	10	0.90298
874		11	88		0.923564
875	11		88		0.923564
878		11	88		0.923564
879	11			88	0.923564
1245	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain