SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4320

Length: 640 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4320

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10741	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] ref\|NP_172228.3\| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] emb\|CAA11525.1\| transcription factor IIA large subunit [Arabidopsis thaliana] gb\|AAR28029.1\| TFIIA-L1	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	transcription factor transcription initiation factor	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	60%
Blast2go	gene expression	GO:0010467	Biological Process	60%
Blast2go	primary metabolic process	GO:0044238	Biological Process	60%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor IIA, alpha/beta subunit	IPR004855	-	-
Sma3	Transcription factor IIA, beta-barrel	IPR009088	-	-
Sma3	Transcription factor IIA, alpha subunit, N-terminal	IPR013028	-	-

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
66	66			33	0.997452
67	66		33		0.997452
68	66			33	0.997452
73	33		66		0.997452
74		33	66		0.997452
75	66	33			0.997452
76	66			33	0.997452
77			66	33	0.997452
79		66	33		0.997452
86		33	66		0.997452
89	33			66	0.997452
100	33		66		0.997452
195		75	25		0.996473
200	75		25		0.996473
205	66	33			0.997452
206	66			33	0.997452
207	66			33	0.997452
213			33	66	0.997452
215		33		66	0.997452
216	33			66	0.997452
218	66			33	0.997452
281	88	11			0.923564
282			11	88	0.923564
285		88	11		0.923564
286	88			11	0.923564
287		88	11		0.923564
289	88	11			0.923564
292	88			11	0.923564
293	88		11		0.923564
295	88	11			0.923564
298			88	11	0.923564
299	88	11			0.923564
302	88			11	0.923564
303		11	88		0.923564
304	11		88		0.923564
413	30	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain