SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4282

Length: 580 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene4282 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20533	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9S0L2_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	auxin response factor 18-like	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
433	12	87			0.992554
434		87	12		0.992554
436			12	87	0.992554
442		12	87		0.992554
443		12		87	0.992554
444	12			87	0.992554
446			12	87	0.992554
451	87	12			0.992554
459			12	87	0.992554
460		42	57		1.0
462			57	42	1.0
472	50	50			1.0
475			50	50	1.0
477	50			50	1.0
478		50		50	1.0
479	50			50	1.0
481		50	50		1.0
482	50			50	1.0
483		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain