SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4277

Length: 2236 nt

UniGene Fasta

>uagpf_v2_unigene4277
CGTCGTGACCTTGGCTGTCACTCGTTCTTTTTCTCTGACTCTTTTTTCAGTGTTTAAGTTTCTGAAGGGTTCGAGATATATGCAATCGTGGCTTTTGACGATACATGCTTAATTACGCCTTTATAGTGCCCTCTGAAGGGAGGGTTGCACTTGCGGTTGTGTTTTAAGTTGGTTTTGTGTTTCCCTAATCACCGTGTTAGGGTTCCATTGGTGGTTGTGAGGTGCGTGTGTTAGGGTTACATATAGTTCATTTGGGTCTCTTGTTTACTGAAGTGGGTCTGGTGAGGATTCGAACTCGGGGCTCTTTGTTATTAGGGAAAACAAGAAAATTGAGACACAGATCTGGTGGGGTTTCGTGGTTTGATCTGAAGAATGCAGGGTTCGGGCATTCTTAGCAGCAGCAATGGAGTCCTTAACTCGGGGGTCGGTATCACTGCTGCTTGCGATTCCGGTAGGAAGTTTAGCAATTCGGTATCAGGCAGACGGGCATTTGTTGTACTGGATCCCAAGACTGTATTTTCAAACGGGTCATTGAAGTTTTCCCAATCAATTTTAGCTCCGGGTGCTCAGTGGAGGTGTACATATTCAAAGAGAAGTAGGAAGAACTTTGTTGCAAGAGCTGCTGGAAACTATGATAAAAATTCTCAGCCAATTGCCCCGCTTCAGTTGGAGTCGCCTACGGGCCAATTTCTTTCCCAGCTCATGAAGGAACATCCTCACCTTCTTCCTGCAGCAGTTGATCAACAGTTGGAGAGGCTTGTGGCTGATCGCGATGCAGCTGCCCAACAGGAGCCACCTTCATCGACTGGCACAGAGCTTGTACTGTACAGGAGGATTGCAGAGCTGAAGGCTGCAGAGAGGCGTAAGACCCTGGAAGAAATTATCTATGCCCTTATAGTTCAAAAATTCATGGATGCCAGGATTTCCTTGATCCCATGTATTTCAATGCCTGATTCTGTGACTGGGCAAATTGATACATGGCCCAAACAAGACCACAAGCTTGAGGGGGTACATTCTTCCGAGGCCTTTGAGATGATAAAGAATCACCTAGCCCTTGTTCTTGGCAATCGCTTGTTAGACACCAGTTCTATTGCCCAGATTAGTAAGCTGCGAGTAGGGCAAGTATATGCAGCATCAGTTATGTATGGATACTTTTTGAGAAGAGTGGACCAACGTTTCCAGCTTGAGAAAAGCATGAAAACTCTTCCCTACGGATTGAATGAAGAATCGGATGCGGAGCAGCCTCTGGGTAGTGACTCTAAAACCAAGGGTGATTTCCAGACACGGTACTCATCTCCACAAGTTGCTTCTGCAGCAATGCCTAGTATAGGAACACCGTCAGAACCAGAATTCAACCCAACAGTTTATGGTAGCAGGGGAGTGAAGCCTTGTAAATTGAGAGCGTATGTGATGTCCTTTGATCCAGAGACCTTGCAGAGGTATGCGACAATGAGGTCTAAGGAAGGAGTCGGTATAATTGAGAGGCATTCTGAAGCCCTATTTGGAAGGCCTGAAGTTCAGGTTGTAGGTGGGTCTACGGCAGCTACAAACGATGAAATAATTAAGATAAGTTTTTCAGGCTTGACAAGTCTGGTTTTAGAAGCTGTCACTTTTGGCAGCTTTCTTTGGGATGTTGAAAGCTACGTGGACTCCAGGTGCCATTTTGTAACAAACTAGCTTTAAGGGCCATGTTGCAGTATCAGCTGTAAATATGAAGATTGTGACTTTCAGCGATACCTCTAAAAGTTTTGACCCAGATACATGCAAACAGTAGCTTTCTTTGATGACATTCACATGCTCTCTGGATGATAGTTCCAAGTTTATGGCTCAACATTATGTCCTTACTGTTCCTTTATTACCAAAAAATCCTTGCTCTCCACAAAAGATCCCTTTGTAAATATCTGAGACTGTGATCAGATTGAAGGATCTGTCCTCTACGCAACAACTTCTCATTAACAAGGATATCCAGTTGGTAACGTGTTTATTCTACCTGGCTTGTACGTGCATTAGTTGACTTGCTATTGCATGCATCCATTTACGTTTACAGACCCCAGAATCACATGTTGGTCCATACTGGAGGAAATTTATATGAACAGTACCGATCTTCATCGAGAATATCGTGGAAGATCTTTAATTCTATTTCTATCATTTTGATTTTAGGTTCATTTCATTGCCATGCATTGTTCATCTATGTTGCACTGTACTCCGAAGCAATAAAATATCGCTTTTTAAGGGT

Ace file of the UniGene uagpf_v2_unigene4277

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10444	60/63

Source	Descriptions	Term	Type	Identity
AutoFact	DUF760 domain containing protein	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uncharacterized protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF760	IPR008479	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPW2

Fln msg:

Fln protein: MQGSGILSSSNGVLNSGVGITAACDSGRKFSNSVSGRRAFVVLDPKTVFSNGSLKFSQSILAPGAQWRCTYSKRSRKNFVARAAGNYDKNSQPIAPLQLESPTGQFLSQLMKEHPHLLPAAVDQQLERLVADRDAAAQQEPPSSTGTELVLYRRIAELKAAERRKTLEEIIYALIVQKFMDARISLIPCISMPDSVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLALVLGNRLLDTSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPYGLNEESDAEQPLGSDSKTKGDFQTRYSSPQVASAAMPSIGTPSEPEFNPTVYGSRGVKPCKLRAYVMSFDPETLQRYATMRSKEGVGIIERHSEALFGRPEVQVVGGSTAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRCHFVTN*

Protein Length: 436

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTCTTTTTCTCTGACTCTTTTTTCAGTGTTTAAGTTTCTGAAGGGTTCGAGATATATGCAATCGTGGCTTTTGACGATACATGCTTAATTACGCCTTTATAGTGCCCTCTGAAGGGAGGGTTGCACTTGCGGTTGTGTTTTAAGTTGGTTTTGTGTTTCCCTAATCACCGTGTTAGGGTTCCATTGGTGGTTGTGAGGTGCGTGTGTTAGGGTTACATATAGTTCATTTGGGTCTCTTGTTTACTGAAGTGGGTCTGGTGAGGATTCGAACTCGGGGCTCTTTGTTATTAGGGAAAACAAGAAAATTGAGACACAGATCTGGTGGGGTTTCGTGGTTTGATCTGAAGA_-_ATGCAGGGTTCGGGCATTCTTAGCAGCAGCAATGGAGTCCTTAACTCGGGGGTCGGTATCACTGCTGCTTGCGATTCCGGTAGGAAGTTTAGCAATTCGGTATCAGGCAGACGGGCATTTGTTGTACTGGATCCCAAGACTGTATTTTCAAACGGGTCATTGAAGTTTTCCCAATCAATTTTAGCTCCGGGTGCTCAGTGGAGGTGTACATATTCAAAGAGAAGTAGGAAGAACTTTGTTGCAAGAGCTGCTGGAAACTATGATAAAAATTCTCAGCCAATTGCCCCGCTTCAGTTGGAGTCGCCTACGGGCCAATTTCTTTCCCAGCTCATGAAGGAACATCCTCACCTTCTTCCTGCAGCAGTTGATCAACAGTTGGAGAGGCTTGTGGCTGATCGCGATGCAGCTGCCCAACAGGAGCCACCTTCATCGACTGGCACAGAGCTTGTACTGTACAGGAGGATTGCAGAGCTGAAGGCTGCAGAGAGGCGTAAGACCCTGGAAGAAATTATCTATGCCCTTATAGTTCAAAAATTCATGGATGCCAGGATTTCCTTGATCCCATGTATTTCAATGCCTGATTCTGTGACTGGGCAAATTGATACATGGCCCAAACAAGACCACAAGCTTGAGGGGGTACATTCTTCCGAGGCCTTTGAGATGATAAAGAATCACCTAGCCCTTGTTCTTGGCAATCGCTTGTTAGACACCAGTTCTATTGCCCAGATTAGTAAGCTGCGAGTAGGGCAAGTATATGCAGCATCAGTTATGTATGGATACTTTTTGAGAAGAGTGGACCAACGTTTCCAGCTTGAGAAAAGCATGAAAACTCTTCCCTACGGATTGAATGAAGAATCGGATGCGGAGCAGCCTCTGGGTAGTGACTCTAAAACCAAGGGTGATTTCCAGACACGGTACTCATCTCCACAAGTTGCTTCTGCAGCAATGCCTAGTATAGGAACACCGTCAGAACCAGAATTCAACCCAACAGTTTATGGTAGCAGGGGAGTGAAGCCTTGTAAATTGAGAGCGTATGTGATGTCCTTTGATCCAGAGACCTTGCAGAGGTATGCGACAATGAGGTCTAAGGAAGGAGTCGGTATAATTGAGAGGCATTCTGAAGCCCTATTTGGAAGGCCTGAAGTTCAGGTTGTAGGTGGGTCTACGGCAGCTACAAACGATGAAATAATTAAGATAAGTTTTTCAGGCTTGACAAGTCTGGTTTTAGAAGCTGTCACTTTTGGCAGCTTTCTTTGGGATGTTGAAAGCTACGTGGACTCCAGGTGCCATTTTGTAACAAACTAG___CTTTAAGGGCCATGTTGCAGTATCAGCTGTAAATATGAAGATTGTGACTTTCAGCGATACCTCTAAAAGTTTTGACCCAGATACATGCAAACAGTAGCTTTCTTTGATGACATTCACATGCTCTCTGGATGATAGTTCCAAGTTTATGGCTCAACATTATGTCCTTACTGTTCCTTTATTACCAAAAAATCCTTGCTCTCCACAAAAGATCCCTTTGTAAATATCTGAGACTGTGATCAGATTGAAGGATCTGTCCTCTACGCAACAACTTCTCATTAACAAGGATATCCAGTTGGTAACGTGTTTATTCTACCTGGCTTGTACGTGCATTAGTTGACTTGCTATTGCATGCATCCATTTACGTTTACAGACCCCAGAATCACATGTTGGTCCATACTGGAGGAAATTTATATGAACAGTACCGATCTTCATCGAGAATATCGTGGAAGATCTTTAATTCTATTTCTATCATTTTGATTTTAGGTTCATTTCATTGCCATGCATTGTTCATCTATGTTGCACTGTACTCCGAAGCAATAAAATATCGCTTTTTAAGGGT

Fln Alignment:

Contig4277___TAACDSGRKFSNSVSGRRAFVVLDPKTVFSNGSLKFSQSILAPGAQWRCTYSKRSRKNFVARAAGNYDKNSQPIAPLQLESPTGQFLSQLMKEHPHLLPAAVDQQLERLVADRDAAAQQEPPSSTGTELVLYRRIAELKAAERRKTLEEIIYALIVQKFMDARISLIPCISMPDSVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLALVLGNRLLDTSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPYGLNEESDAEQPLGSDSKTKGDFQTRYSSPQVASAAMPSIGTPSEPEFNPTVYGSRGVKPCKLRAYVMSFDPETLQRYATMRSKEGVGIIERHSEALFGRPEVQVVGGSTAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRCHFVTN
B8LPW2_______________TAACDFGRKFSNSVSGSRAFVALDPKNAFSNGSLKFSQSIITPGPQWRCTYSKRSRRNFGVRAAGNYDESSKPIAPLQLESPTGQFLSQLLKDHPHLLPAAVEQQLERLVADRDAAAQQDPPSSTSTELVLYRRIAEVKAAERRKALEEIMYALIVQKFMDARISLIPCISMPDPVTGQIDTWPKQDHKLEGVHSSEAFEMIKNHLSLVLGNRLLDSSSIAQISKLRVGQVYAASVMYGYFLRRVDQRFQLEKSMKTLPSGLNEESDAEQTLGSDSKTKGEFQTRYSSPQVASAAMPSIGTPSEPEFNPTVNGRRGVKPCKLRAYVMSFEPETLQRYATMRSKEGVSIIEKHSEALFGRPEVQVVGGSVAATNDEIIKISFSGLTSLVLEAVTFGSFLWDVESYVDSRYHFVTN

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
29	50			50	1.0
31		50		50	1.0
32			50	50	1.0
34			50	50	1.0
35			50	50	1.0
38		50	50		1.0
41		50	50		1.0
43		50		50	1.0
49		50		50	1.0
136		75		25	0.996473
396	12		87		0.992554
405		12	87		0.992554
499	80		20		0.995493
502		20		80	0.995493
504		20		80	0.995493
569			28	71	1.0
570		71		28	1.0
573			71	28	1.0
575	28			71	1.0
576		28	71		1.0
579		71		28	1.0
580	71		28		1.0
585			71	28	1.0
586	71	28			1.0
587	28		71		1.0
588		28	71		1.0
590		14	71		0.984337
591	14	14		71	0.984337
840		80		20	0.995493
847	80			20	0.995493
888	80			20	0.995493
889	80	20			0.995493
891	80	20			0.995493
893	80		20		0.995493
895			25	75	0.996473
897			25	75	0.996473
898		75		25	0.996473
899			25	75	0.996473
901		25		75	0.996473
910			33	66	0.997452
912			33	66	0.997452
914		33	66		0.997452
916			33	66	0.997452
1522	25	50	25		0.995533
1524	75	25			0.996473
1525			25	75	0.996473
1527			25	75	0.996473
1528	25		75		0.996473
1529		25	75		0.996473
1530	75	25			0.996473
1531	75			25	0.996473
1532			75	25	0.996473
1534		75	25		0.996473
1538	75			25	0.996473
1539	75	25			0.996473
1540	25		75		0.996473
1541		25		75	0.996473
1612	80	20			0.995493
1618	20		80		0.995493
1619		20		80	0.995493
1620		20		80	0.995493
1737		16		83	1.0
1738	83		16		1.0
1740		16	83		1.0
1741	83		16		1.0
1742	83			16	1.0
1745		16		83	1.0
1746		16		83	1.0
1747			83	16	1.0
1750	83		16		1.0
1753			16	83	1.0
1759			83	16	1.0
1760	83	16			1.0
1761	16			83	1.0
1796	88	11			0.999937
1799	88	11			0.999937
1801		88		11	0.999937
1802			11	88	0.999937
1803	11			88	0.999937
1804		11		88	0.999937
1808			11	88	0.999937
1810	88	11			0.999937
1813	88			11	0.999937
1819	88			11	0.999937
1917		46		53	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain