SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4246

Length: 896 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4246

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4341	34/35

Source	Descriptions	Term	Type	Identity
AutoFact	Histidine-containing phosphotransfer protein n=1 Tax=Catharanthus roseus RepID=Q94KS0_CATRO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	histidine-containing phosphotransfer	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	cell growth	GO:0016049	Biological Process	83%
Blast2go	embryo sac development	GO:0009553	Biological Process	83%
Blast2go	regulation of cytokinin mediated signaling pathway	GO:0080036	Biological Process	83%
Blast2go	cell division	GO:0051301	Biological Process	83%
Blast2go	histidine phosphotransfer kinase activity	GO:0009927	Molecular Function	83%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	83%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	IPR008207	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
90		80		20	0.995493
160			83	16	0.994512
163	83			16	0.994512
165		16		83	0.994512
166	83	16			0.994512
167	83			16	0.994512
170	83		16		0.994512
171	83	16			0.994512
173	83		16		0.994512
174		83		16	0.994512
175	33	16	50		1.0
176	16			83	0.994512
177		16	83		0.994512
179		16	83		0.994512
180	16			83	0.994512
241	83	16			0.994512
242	83		16		0.994512
245	16			16	0.988813
246	83		16		0.994512
248		16	83		0.994512
250	83			16	0.994512
251			83	16	0.994512
253	83		16		0.994512
254		16	83		0.994512
258		16		83	0.994512
264	11		88		0.923564
266	11	33			1.0
268	62			37	1.0
269	62		37		1.0
271	62	37			1.0
272	62	37			1.0
273		62		37	1.0
274	50			37	1.0
275	62		37		1.0
281		37	62		1.0
283		37	62		1.0
284	62			37	1.0
356	84		15		0.999986
363	26	73			1.0
365	73		26		1.0
367	26			73	1.0
370	80			20	1.0
372			20	80	1.0
373			20	80	1.0
377			80	20	1.0
378		20	80		1.0
381	86	13			0.999973
443	89	10			0.999919
444	89		10		0.999919
446		10	89		0.999919
447		88	11		0.999937
449	88		11		0.999937
451	88	11			0.999937
452	88	11			0.999937
455			11	88	0.999937
456		88	11		0.999937
458	88			11	0.999937
459		88	11		0.999937
461	11			88	0.999937
462		11		88	0.999937
755			33	66	1.0
774			66	33	1.0
836			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain