SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4121

Length: 779 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4121

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene862	15/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNase_P_Rpp14 domain containing protein	-	-	8.0e-10	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	tRNA processing	GO:0008033	Biological Process	0.0	92%
Blast2go	ribonuclease activity	GO:0004540	Molecular Function	0.0	92%

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
139	66		33		0.997452
143		66		33	0.997452
144		66	33		0.997452
146		33	66		0.997452
151	66		33		0.997452
152	66	33			0.997452
153			66	33	0.997452
161	33			66	0.997452
203	75	25			0.996473
204	75		25		0.996473
206	75		25		0.996473
208		25	75		0.996473
209		25		75	0.996473
210		75		25	0.996473
213	75		25		0.996473
216		75		25	0.996473
219	75	25			0.996473
220	75			25	0.996473
226	66	33			1.0
227			33	66	1.0
229		33	66		1.0
231			66	33	1.0
232		66	33		1.0
235	66	33			1.0
236		66		33	1.0
241	66			33	1.0
242	66		33		1.0
243	66			33	1.0
244		33	66		1.0
248	16	16			0.988813
341		14	85		0.993533
343			85	14	0.993533
347		14		85	0.993533
348	85	14			0.993533
352		14		85	0.993533
357		14	85		0.993533
358	85			14	0.993533
359	85	14			0.993533
360	14		85		0.993533
383			10	90	0.90298
384	90		10		0.90298
385	90	10			0.90298
388	90	10			0.90298
390	90	10			0.90298
392	90	10			0.90298
393	10			90	0.90298
480	11			88	0.923564
482		88		11	0.923564
484		11		88	0.923564
486		11		88	0.923564
516		50		50	1.0
634	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain