SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4105

Length: 760 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4105

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26046	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	Natural resistance-associated macrophage protein, putative n=1 Tax=Ricinus communis RepID=B9SG31_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	natural resistance-associated macrophage protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	85%
Blast2go	manganese ion transport	GO:0006828	Biological Process	85%
Blast2go	iron ion homeostasis	GO:0055072	Biological Process	85%
Blast2go	response to zinc ion	GO:0010043	Biological Process	85%
Blast2go	transporter activity	GO:0005215	Molecular Function	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Natural resistance-associated macrophage protein	IPR001046	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
126		66		33	0.997452
129	33		66		0.997452
130	66			33	0.997452
134			33	66	0.997452
135	33			66	0.997452
141	33			66	0.997452
146		66		33	0.997452
147			33	66	0.997452
148		66	33		0.997452
149	66		33		0.997452
207		25	75		0.996473
208	75		25		0.996473
212		25		75	0.996473
214	75			25	0.996473
217	75		25		0.996473
218	75	25			0.996473
221		25	75		0.996473
255		20		80	0.995493
256	80		20		0.995493
262	80	20			0.995493
269		20		80	0.995493
271	80		20		0.995493
273		20	80		0.995493
275		20		80	0.995493
276	66	16		16	0.988813
277		16	16	66	0.988813
278	16			83	0.994512
279	83	16			0.994512
280			16	83	0.994512
284		16		83	0.994512
288		83	16		0.994512
289	83		16		0.994512
290		16		83	0.994512
291	83			16	0.994512
292	83		16		0.994512
294	83	16			0.994512
295	16		83		0.994512
296		16		83	0.994512
299		16	83		0.994512
381		11	88		0.923564
384		11	88		0.923564
386		88		11	0.923564
387	88		11		0.923564
389	88	11			0.923564
391	87			12	0.992554
393			11	88	0.923564
394		88	11		0.923564
395	88	11			0.923564
398			88	11	0.923564
399	88	11			0.923564
400	11			88	0.923564
405	12			87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain