SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4090

Length: 1415 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4090

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2422	67/73

Source	Descriptions	Term	Type	Identity
AutoFact	auxin response factor 2 [Arabidopsis thaliana] ref\|NP_201006.2\| auxin response factor 2 [Arabidopsis thaliana] ref\|NP_974980.1\| auxin response factor 2 [Arabidopsis thaliana] sp\|Q94JM3.2\|ARFB_ARATH RecName: Full=Auxin response factor 2; AltName: Full=ARF1	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	auxin response factor 2	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	fruit dehiscence	GO:0010047	Biological Process	66%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	66%
Blast2go	negative regulation of cell proliferation	GO:0008285	Biological Process	66%
Blast2go	ovule development	GO:0048481	Biological Process	66%
Blast2go	floral organ abscission	GO:0010227	Biological Process	66%
Blast2go	leaf senescence	GO:0010150	Biological Process	66%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: Separated hits, possible frame ERROR between 442 and 447, query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 216 - 450

Fln protein: VVTLAVTQNYLVFVVTLAVTQGGDSNPSKIRASVNEEELHVAAHASTETHLLSVEPDQQSEQTKTAKSDAPAGSCEQEKTSPRSSQETQCRASAQSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELDLMFNFEGQLQDANKxxxQVVYTDDEGDMMLVGDDPWQEFCSMVRKIFIYTREEVEKMTPRTPPNMKLPGHAEEEKVARETPTR*

Protein Length: 217

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACTATTTGGTTTTCGTCGTGACCTTGGCTGTCACTCAAGGGGGTGACTCAAACCCATCAAAAATCAGAGCTTCTGTTAATGAGGAAGAGTTACATGTTGCTGCTCATGCTTCAACAGAAACTCATTTACTGTCTGTAGAGCCCGACCAACAGTCAGAACAAACAAAAACAGCCAAGTCTGATGCACCTGCTGGAAGCTGTGAACAAGAGAAAACATCTCCAAGATCATCCCAAGAAACACAATGTAGGGCTTCAGCTCAGAGCAATTCTACAAGGAGCTGTACCAAGGTACATAAGCAAGGTAGTGCTCTTGGGAGAGCCGTGGATCTTACAAAATTTGAAGGCTATACAGAGCTTATTCGTGAACTGGATTTGATGTTCAATTTTGAAGGACAACTGCAGGATGCAAACAAAGGxxxxxxGCAGGTTGTCTACACAGATGATGAAGGAGACATGATGCTTGTAGGAGATGATCCATGGCAAGAGTTCTGCAGCATGGTGCGCAAGATTTTCATATATACACGCGAGGAAGTTGAAAAAATGACTCCTAGGACACCCCCAAACATGAAGCTTCCAGGGCATGCTGAAGAGGAAAAAGTTGCAAGAGAAACCCCTACTCGGTAGCCAGTGCATAAAGAAATTCTGATGCCCAGCACTTTAGTATTTGATTTATAAGTCTATCCTGCTTAATTGCAGCCACTAGATTGTGAATTGGCACATAAAGTGCTCGGTATGCATTGTCTATATTTTTGCTTGTTTTGGTCTGGTTTTAATTTCAACTTGAACGTTGAAGGAATTGTTGCTCCAACAAATTTGGTTTCTATATGGACACAAACATTGAAGGTCTTATTGCTGAGTTGACGATGAGGCTTATACGAGCTGTATTAGTTTTACTGAAGAACTGGAATGAGGATGTGATCCAATCCCAGTTTAAGAGGTATTTTGTTTAGTGACAGACTATCGACTAGCTACAGAGACACTATCAGGCAGCGGCTACCTGGCCTGTGATAAATAGTTTTGATAGCTGATCTCCTTATGGAAATTAACGGAAATTTTAGTAATTTTTTTATTGTCTCAAGTATATTAGTTTAGTTTCGATGGCACAAGCCAGATATGCATTTAAAGGCACAGATCATCAAGTTCATTTTGGCCTCAAAAATTTAAAATACATGAACACAGGTTGGTGTTGGTCAAAGTAGTGCCATTAATTTTCTTCCAGACAACTACCAACTTTTGTCGTTGAGAGATTGTACCTCCAAAGGCAGGTTTTGGCGAAGTAATTTTTTCTGGAAATACTAATTGTTAATGTTAAAATGGTCTTGAAAAATCAGCTTGTTATGGCCATTGTATTATTCTCTCAATATGTAAAGAAATTACACTTGAGTTTTACGG

Fln Alignment:

Contig4090___PSKIRASVNEEELHVAAHASTETHLLSVEPDQQSEQTKTAKSDAPAGSCEQEKTSPRSSQETQCRASAQSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELDLMFNFEGQLQDANKGxxQVVYTDDEGDMMLVGDDPWQEFCSMVRKIFIYTREEVEKMTPRTPPNMKLPGHAEE
C0PTP3_______________PSTLRGLAAGEDIHVSVPNITVHEPQSSESDQHSEPSSIAKMDMPAAIIDEEKSSQKSSKETHNRP--QSNSTRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDPNKGxxQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQT-PSAKLKGCSED

SNPs (tot: 121)

Position	A %	C %	G %	T %	Probability
59	50	50			1.0
60	25	50	25		0.995533
61	25			75	0.996473
63	50		25		0.995533
64	75			25	0.996473
66	25		75		0.996473
67		25	75		0.996473
68		25	75		0.996473
69			75	25	0.996473
72	75		25		0.996473
75		83	16		0.994512
76	66		16	16	0.988813
77	66	16		16	0.988813
78	83		16		0.994512
79	16	83			0.994512
81	16	83			0.994512
84		83		16	0.994512
85	83		16		0.994512
86	83		16		0.994512
87	83	16			0.994512
88	83			16	0.994512
89	83		16		0.994512
93			83	16	0.994512
94	83	16			0.994512
95	16		83		0.994512
232	85	14			0.993533
234	85	14			0.993533
236	85			14	0.993533
237	85		14		0.993533
239	85	14			0.993533
241	85			14	0.993533
243		85	14		0.993533
244			14	85	0.993533
246		85		14	0.993533
247	14		14		0.984337
248	85			14	0.993533
249	85	14			0.993533
250	14		85		0.993533
251	85	14			0.993533
434	66		33		0.997452
435	66			33	0.997452
436	66			33	0.997452
438	66		33		0.997452
439	66	33			0.997452
488		33		66	0.997452
491	66	33			0.997452
495		25	75		0.996473
496	75	25			0.996473
499	75	25			0.996473
501		75		25	0.996473
504		25		75	0.996473
505			75	25	0.996473
506		25	75		0.996473
507	25	75			0.996473
522	80		20		0.995493
524		20	80		0.995493
529		20	80		0.995493
530		80		20	0.995493
531	80			20	0.995493
532	80		20		0.995493
534	80	20			0.995493
537		25		75	0.996473
614	66	33			1.0
616	66			33	1.0
617		33	66		1.0
620	66			33	1.0
621	66		33		1.0
623	66	33			1.0
624		33	66		1.0
628		66	16		0.988813
629	66	16			0.988813
630	66		16	16	0.988813
631		16	83		0.994512
632	66			16	0.988813
633			83	16	0.994512
634	66	16		16	0.988813
635	85	14			0.993533
636	85	14			0.993533
637		85		14	0.993533
638		85		14	0.993533
639	14	85			0.993533
640	14	85			0.993533
649	87		12		0.992554
650	12		87		0.992554
653	87			12	0.992554
654			87	12	0.992554
655			12	87	0.992554
658	87		12		0.992554
662	87	12			0.992554
663	87			12	0.992554
664		12	87		0.992554
710		90	10		0.90298
715	10			90	0.90298
716	80	20			0.999996
717	90	10			0.90298
718		10		90	0.90298
722	90			10	0.90298
724		90		10	0.90298
773	57	42			1.0
774	5		40	55	1.0
776		40		60	1.0
777			40	60	1.0
786			35	65	1.0
787		35	5	60	1.0
789		5	35	60	1.0
790	5		60	35	1.0
791		40	60		1.0
792	35			65	1.0
795	5	31	63		1.0
796	31		68		1.0
866	91		8		0.999807
871	91	8			0.999807
872		8	91		0.999807
873			91	8	0.999807
875		91	8		0.999807
876		8		91	0.999807
878	91		8		0.999807
880		8		91	0.999807
881	8		91		0.999807
884	8		91		0.999807
1172		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain