SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4070

Length: 1529 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4070

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5910	47/63
SustainPine v2.0	sp_v2.0_unigene61505	13/63
SustainPine v2.0	sp_v2.0_unigene62726	2/63

Source	Descriptions	Term	Type	Identity
AutoFact	WWE protein-protein interaction domain family protein [Arabidopsis thaliana] sp\|Q8RY59.1\|RCD1_ARATH RecName: Full=Inactive poly [ADP-ribose] polymerase RCD1; AltName: Full=Protein RADICAL-INDUCED CELL DEATH 1 gb\|AAL91641.1\| At1g32230/F3C3_1 [Arabidopsis t	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	wwe protein-protein interaction domain family protein	-	-	52%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	52%
Blast2go	response to endogenous stimulus	GO:0009719	Biological Process	52%
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	52%
Blast2go	regulation of cellular process	GO:0050794	Biological Process	52%
Blast2go	response to organic substance	GO:0010033	Biological Process	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQZ4

Fln msg: your sequence is longer than subject: 417 - 338

Fln protein: MNMEVKNNKALAEFHKVQKRKRASRCAAYLTAVTSYAKGAVTNSTPSTKRRKTEALECYGDDLKYCCSRKTVLHNYGNFSKSALPSRVMYFWEGEWNDFPENIVASVRNVFQSGKSAAEVSFDGSLYLLDFLRMVQIDLATGTQRSIAWIDQNGKCFFPKYFFEGSEMQGCLNGVQGNNERTHQCCFSSEQSRQIAVKVEIGISGIESSKSENSGEVSVTNCQSEESQSQSLDTESSELEQDSSDTGNLSNGFLSKETNADYGMGACESQSVVYLNGSETFGYGELADKLIKLENGNHEYVAVRNKFLAGLSTLVTFSSIVGIYRCVPSSSSAQARLQAFQNHVEITRKFRGKANIRYAWHGTSRKGVAGIVLHGFGQTNTPTMGQLMALVFIFLQKIVRMSVLAIQMLTKMAYGT*

Protein Length: 418

Fln nts: TAATTTTTTTGGGGGATGTAATTTCCACAGGCAAGCGAGGCAGGCGTACGAGCTAGGGTTTCAGGCCTTTTATGATCGGATACTGAGCGAAATTTGGTGGAGATGGCCCCGTTAGCTGCGCCGAGACCCCCAAACTATAGGCATTGTTCTTTTTCTGAGGACAGGGCATGTTGGGTTTTCTCGGCTTCTCTCCGAAGGAGAGCTGTACTGTAGTGTTGTAAATGCTCTGTTTTTGAGTTCTTAGTTTTAGGTTCCGAAAGGTTTTGTAAC_-_ATGAATATGGAAGTGAAGAACAACAAAGCGTTGGCCGAATTTCACAAAGTTCAAAAAAGAAAGCGCGCAAGTCGATGTGCAGCATATTTGACTGCAGTCACTTCTTATGCGAAAGGTGCTGTAACTAACTCAACGCCATCAACTAAGCGCCGTAAGACAGAGGCCTTGGAATGCTATGGAGATGATTTAAAATATTGTTGTTCTAGAAAAACTGTTTTGCACAATTATGGCAATTTTAGCAAGAGTGCGTTGCCGTCCCGGGTCATGTATTTCTGGGAAGGAGAGTGGAATGATTTTCCTGAAAATATAGTTGCCTCTGTGAGGAATGTATTTCAGTCTGGAAAATCAGCGGCAGAGGTGTCATTTGACGGCTCTTTGTATTTGCTTGACTTTCTACGGATGGTTCAGATCGATCTGGCAACAGGAACTCAGCGATCAATTGCTTGGATAGATCAAAATGGCAAGTGTTTCTTTCCCAAGTATTTCTTCGAGGGCAGTGAGATGCAGGGCTGCTTAAACGGCGTGCAGGGCAACAATGAACGAACTCATCAGTGTTGTTTCAGCAGTGAACAATCTCGACAAATTGCGGTCAAGGTTGAAATTGGAATAAGTGGGATAGAGAGTTCTAAGTCGGAAAACAGCGGCGAGGTATCTGTTACTAATTGCCAATCAGAGGAATCTCAGTCCCAATCTTTGGATACGGAGTCCAGTGAATTGGAGCAAGACTCCAGCGACACTGGGAACCTGAGCAATGGTTTTCTGTCTAAAGAAACAAATGCAGATTATGGAATGGGTGCGTGTGAATCACAATCTGTCGTTTATCTTAATGGTTCTGAAACTTTTGGATATGGTGAGTTAGCTGACAAACTAATTAAATTAGAGAATGGTAATCATGAGTATGTAGCTGTGAGGAACAAGTTTCTTGCTGGTCTTAGTACACTTGTAACATTTAGCAGCATTGTTGGTATTTATCGATGTGTGCCATCAAGTTCTTCGGCACAGGCTCGATTGCAGGCATTTCAAAATCACGTTGAGATTACTAGAAAATTCCGTGGCAAAGCTAATATCAGATATGCCTGGCATGGTACTTCTCGGAAGGGTGTAGCTGGCATCGTATTACATGGTTTTGGCCAAACCAATACACCAACAATGGGGCAGCTTATGGCATTGGTGTTTATCTTTCTCCAGAAGATTGTTCGCATGTCAGTGCTGGCTATTCAGATGTTGACGAAAATGGCTTACGGCACATAG___TATTATGC

Fln Alignment:

Contig4070___CCSRKTVLHNYGNFSKSALPSRVMYFWEGEWNDFPENIVASVRNVFQSGKSAAEVSFDGSL-YLLDFLRMVQIDLATGTQRSIAWIDQNGKCFFPKYFFEGSEMQGCLNGVQGNNERTHQCCFSSEQSRQIAVKVXXXXXXXXXXXXXXXXX----VSVTNCQSEESQSQ-SLDTESSELEQDSSDTGNLSNGFLSKETNADYGMGACESQSVVYLNGSETFGYGELADKLIKLENGNHEYVAVRNKFLAGLSTLVTFSSIVGIYRCVPSSSSAQARLQAFQNHVE-ITRKFR-GKANIRYAWHGTSRKGVAGIVLHGFGQTNTPTMGQLMALVFIFLQKI
B8LQZ4_______________CCSGMVVVENYNNFRKSGIPARFMYLCKGEWIDFPSETVCILKQGFQSGKTAIEIAMRGSSSYLVDFLRMSRIDLSDGFHTWIAWIDIQGKCFFPRV-----------------------CC---QENPSLDIKVDLRKPLQTGECEAIATNNNGKPTVVESESESALEQGSSDSVPGEDHSQLSDDAQFPECRTAAASVRISESGASTSASPELESGS-LFGSNNSNNLMIKLEDSDREFVAVRDRFLGGLSTLAALTSVVGIYRTV----SGQARSQTFQRHAEDVARKSADGNANVRYAWHGTSNKGVSGIILHGFGHPKRLSMAQLMALVSILHLKI

SNPs (tot: 121)

Position	A %	C %	G %	T %	Probability
142	50	50			1.0
144		50		50	1.0
147	50			50	1.0
150	50			50	1.0
151			50	50	1.0
152	50			50	1.0
153		50		50	1.0
154	50			50	1.0
246	10			90	0.90298
247		10		90	0.90298
248		10		90	0.90298
250	90			10	0.90298
253		10		90	0.90298
255		90	10		0.90298
256		50		50	1.0
257		10	90		0.90298
259	90	10			0.90298
260	90			10	0.90298
261		10	90		0.90298
262	10		90		0.90298
272	60		40		1.0
368			77	22	0.999999
383	90			10	0.90298
384	90	10			0.90298
385	90		10		0.90298
386			90	10	0.90298
388	10			90	0.90298
389		10	90		0.90298
393			10	90	0.90298
394	90	10			0.90298
395	90			10	0.90298
396		90	10		0.90298
398	90	10			0.90298
493	88		11		0.923564
495	88			11	0.923564
496	88		11		0.923564
498		11		88	0.923564
500		11		88	0.923564
501			88	11	0.923564
502		11	88		0.923564
503	11	88			0.923564
532			88	11	0.923564
537	88		11		0.923564
538		11		88	0.923564
578		36		63	1.0
579	63		36		1.0
581	63	36			1.0
584			36	63	1.0
585	36		63		1.0
592			36	63	1.0
593		36	63		1.0
594	63			36	1.0
596			60	40	1.0
597	60	40			1.0
599		50		50	1.0
600			66	33	1.0
601		33		66	1.0
603		16		83	0.999991
604			16	83	0.999991
606		83	16		0.999991
609		16		83	0.999991
612			83	16	0.999991
614	83		16		0.999991
615	83	16			0.999991
616	83			16	0.999991
617	83		16		0.999991
623			83	16	0.999991
624		16	83		0.999991
625	16	83			0.999991
626	75	25			1.0
628	75			25	1.0
629		25	75		1.0
633	25			75	1.0
635	75	25			1.0
638			25	75	1.0
640	75	25			1.0
641		75		25	1.0
643		26	73		1.0
647	23		11		1.0
649			11	88	0.999952
652		11		88	0.999952
653	88	11			0.999952
656			11	88	0.999952
661		11	88		0.999952
669	88		11		0.999952
876		16		83	1.0
1002			11	88	0.923564
1003		88		11	0.923564
1007		88		11	0.923564
1014			88	11	0.923564
1018	88	11			0.923564
1019		88		11	0.923564
1020		88	11		0.923564
1022		11	88		0.923564
1026	87			12	0.992554
1027	87	12			0.992554
1028	12			87	0.992554
1030			80	20	0.995493
1032		16		83	0.994512
1033			16	83	0.994512
1038	16			83	0.994512
1040		16		83	0.994512
1041	83			16	0.994512
1042	83			16	0.994512
1043	83		16		0.994512
1045	83	16			0.994512
1046	83			16	0.994512
1047	83		16		0.994512
1048		83		16	0.994512
1049	83	16			0.994512
1051	83	16			0.994512
1053		16	83		0.994512
1054	16	83			0.994512
1122		11		88	0.923564
1123	88		11		0.923564
1125		11	88		0.923564
1130		11	88		0.923564
1133	88		11		0.923564
1138	87			12	0.992554
1141	87	12			0.992554
1142	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain