SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4060

Length: 484 nt

UniGene Fasta

>uagpf_v2_unigene4060
CAGCAAACAAAGAGTGCTGCAACAGAGGAATTGAGTTCTTTTTATGATAAAATAAGGCCAGTGATTCAGGAGCATGGGAAGGATGGTCAGGATAGTGTGCCGACCAGTTTAGCAGAGGAGTGGATTAAAGCAACTTGTGGACAACTAAAAGCTACTTTTGATGCACACTACTCTATTATGAAGCATACATCAAACAATCTTCGAGGTGCACATGGTGCAGTTCTCAACATGCAGGGAGACCAAGCAAACTTCCTTGACAGGAAGGACTAGATGTTTCTGAATTATATCCTGAATTTTGTACAAAGGCAATATGATTGAAAGCAGAGGTTGTTGGCCCAGTGTGGTCATGATAATGTGCCAATTTTGTGCCATCATGCCATGCTTTGTCAATGTAAAATCTTGCTATGTCCAAAGCAGCATGAGAAAGCTGCATATTCATTGCATGATTGTATTGACAAATATTTAAAGAATTCTTTGTCCTCAC

Ace file of the UniGene uagpf_v2_unigene4060

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1781	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9H7V1_POPTR	-	-	47%
FL-Next	sp=Histone-lysine N-methyltransferase ASHH1; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	histone-lysine n-methyltransferase ashh1-like	-	-	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	59%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	59%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	59%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	AWS	IPR006560	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Zinc finger, RING-like	IPR014857	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84WW6

Fln msg: your sequence is shorter than subject: 90 - 492

Fln protein: QQTKSAATEELSSFYDKIRPVIQEHGKDGQDSVPTSLAEEWIKATCGQLKATFDAHYSIMKHTSNNLRGAHGAVLNMQGDQANFLDRKD*

Protein Length: 91

Fln nts: CAGCAAACAAAGAGTGCTGCAACAGAGGAATTGAGTTCTTTTTATGATAAAATAAGGCCAGTGATTCAGGAGCATGGGAAGGATGGTCAGGATAGTGTGCCGACCAGTTTAGCAGAGGAGTGGATTAAAGCAACTTGTGGACAACTAAAAGCTACTTTTGATGCACACTACTCTATTATGAAGCATACATCAAACAATCTTCGAGGTGCACATGGTGCAGTTCTCAACATGCAGGGAGACCAAGCAAACTTCCTTGACAGGAAGGACTAG___ATGTTTCTGAATTATATCCTGAATTTTGTACAAAGGCAATATGATTGAAAGCAGAGGTTGTTGGCCCAGTGTGGTCATGATAATGTGCCAATTTTGTGCCATCATGCCATGCTTTGTCAATGTAAAATCTTGCTATGTCCAAAGCAGCATGAGAAAGCTGCATATTCATTGCATGATTGTATTGACAAATATTTAAAGAATTCTTTGTCCTCAC

Fln Alignment:

Contig4060___QQTKSAATEELSSFYDKIRPVIQEHGKDGQDSVPTSLAEEWIKATCGQLKATFDAHYSIMKHTSN
Q84WW6_______________EEVKKEAAVRLSSLYDEIRPAIEEHERDSQDSVATSVAEKWIQASCNKLKAEFDLYSSVIKNIAS

SNPs (tot: 3)

Position	A %	C %	T %	Probability
56	80	20		0.995493
58	80	20		0.995493
446		16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain