SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4032

Length: 244 nt

UniGene Fasta

>uagpf_v2_unigene4032
CGTCGTGACCTTGGCTGTCACTCATTTATCTTGCAAAAGGAATCCACTCTGGGGTCGTGGGGATTACTCGGTGGGATTGCACAGAAGAGGAACTTGCAAAAGAAGAATGGAGATCAAGATGGGAAGACCAGCTCTACAATTTAAAGCAGAGAGCTAATGTTAGAGATGCAGGTCCAGCATCATCTTGGGGTGCCAGGATGCGCCAGCAGAACTATTCGACTTCCAGTTGATCAATTTGCTAGCT

Ace file of the UniGene uagpf_v2_unigene4032

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7378	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ-like protein isoform n=1 Tax=Solanum phureja RepID=Q0GA60_9SOLN	-	-	1.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	like protein	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	69%
Blast2go	response to stress	GO:0006950	Biological Process	69%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	69%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSB8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 76 - 177

Fln protein: S*PWLSLIYLAKGIHSGVVGITRWDCTEEELAKEEWRSRWEDQLYNLKQRANVRDAGPASSWGARMRQQNYSTSS*

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATCTTGCAAAAGGAATCCACTCTGGGGTCGTGGGGATTACTCGGTGGGATTGCACAGAAGAGGAACTTGCAAAAGAAGAATGGAGATCAAGATGGGAAGACCAGCTCTACAATTTAAAGCAGAGAGCTAATGTTAGAGATGCAGGTCCAGCATCATCTTGGGGTGCCAGGATGCGCCAGCAGAACTATTCGACTTCCAGTTGA___TCAATTTGCTAGCT

Fln Alignment:

Contig4032___YLAKGIHSGVVGITRWDCTEEELAKEEWRSRWEDQLYNLKQRANVRDAGPASSWGARMRQQNYSTSS
A9NSB8_______________YLSGRIHAGVSGINRWDYTQEELAKEEWRSRWETQLYDLKQRANFKDAGQASSWGARMRQQNRSTSS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
171	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain