SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3996

Length: 1085 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3996

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14329	36/36

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter family protein n=1 Tax=Camellia sinensis RepID=F5A834_CAMSI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	abc transporter family protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		81%
Blast2go	Tetracycline biosynthesis	00253		81%
Blast2go	Lysine degradation	00310		81%
Blast2go	Arginine and proline metabolism	00330		81%
Blast2go	Histidine metabolism	00340		81%
Blast2go	Tyrosine metabolism	00350		81%
Blast2go	Benzoate degradation	00362		81%
Blast2go	Lipopolysaccharide biosynthesis	00540		81%
Blast2go	Glycerophospholipid metabolism	00564		81%
Blast2go	Ether lipid metabolism	00565		81%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604		81%
Blast2go	Toluene degradation	00623		81%
Blast2go	Naphthalene degradation	00626		81%
Blast2go	Aminobenzoate degradation	00627		81%
Blast2go	Ethylbenzene degradation	00642		81%
Blast2go	Butanoate metabolism	00650		81%
Blast2go	Methane metabolism	00680		81%
Blast2go	Limonene and pinene degradation	00903		81%
Blast2go	Diterpenoid biosynthesis	00904		81%
Blast2go	Carotenoid biosynthesis	00906		81%
Blast2go	Anthocyanin biosynthesis	00942		81%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945		81%
Blast2go	Isoquinoline alkaloid biosynthesis	00950		81%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		81%
Blast2go	Betalain biosynthesis	00965		81%
Blast2go	Biosynthesis of unsaturated fatty acids	01040		81%
Blast2go	Biosynthesis of type II polyketide backbone	01056		81%
Blast2go	Biosynthesis of terpenoids and steroids	01062		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Biosynthesis of secondary metabolites	01110		81%
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	81%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	81%
Blast2go	cuticle development	GO:0042335	Biological Process	81%
Blast2go	response to red light	GO:0010114	Biological Process	81%
Blast2go	response to cold	GO:0009409	Biological Process	81%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	81%
Blast2go	endocytosis	GO:0006897	Biological Process	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	81%
Blast2go	response to far red light	GO:0010218	Biological Process	81%
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	ATPase activity	GO:0016887	Molecular Function	81%
Blast2go	transporter activity	GO:0005215	Molecular Function	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC52

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 26 aas, your sequence is shorter than subject: 268 - 329

Fln protein: VVTLAVTQDLDCF*LEPMRRDLGCHSILAGKHMVGGKDVVQVLGRSAFHDTSLVCSGELAYLGGSWSKTVGCAGDIPLQGDFCASHMIYGVEGVDPARREKLIELLDIDLGWKMHKVSDGQRRRVQICMNLLHPFKVLLLDEVTVDLDVVARLDLLDFLREECEQRGATIVYATHIFDGLESWVTHVAYIEDGKLKRFEKLSELNEMRNAINLLQVVESWLRAENKDKDNKTLNASYPVQDGFSTIRSFTIYFKEAYGLLSLIMCLS*

Protein Length: 269

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATCTAGACTGCTTCTAGTTGGAGCCAATGCGTCGTGACCTTGGCTGTCACTCGATTTTGGCGGGCAAGCACATGGTGGGTGGCAAAGATGTAGTTCAGGTGCTGGGTCGTTCTGCTTTTCATGATACTTCTCTGGTGTGTAGTGGCGAGCTTGCTTACTTGGGAGGTTCTTGGAGCAAAACTGTTGGTTGTGCTGGGGATATACCACTGCAAGGCGATTTCTGTGCATCACACATGATTTATGGAGTGGAAGGAGTAGACCCAGCTCGGAGAGAGAAACTAATTGAACTGCTTGATATTGATCTTGGCTGGAAAATGCACAAAGTGTCAGATGGCCAGCGCCGCCGTGTACAGATTTGTATGAATCTTCTTCATCCATTCAAGGTCTTGCTGCTGGATGAGGTGACGGTTGATTTGGATGTTGTGGCGAGATTGGACTTGCTTGATTTTCTTAGGGAAGAGTGTGAACAGAGAGGTGCAACTATTGTTTATGCAACGCATATTTTTGATGGCCTAGAGTCATGGGTTACCCATGTTGCATATATTGAAGATGGAAAATTGAAACGCTTTGAAAAACTATCAGAACTGAATGAAATGAGAAATGCTATTAATTTGCTTCAAGTTGTCGAGTCATGGCTTCGGGCTGAAAACAAAGACAAGGACAACAAAACCCTCAATGCCAGCTACCCAGTTCAAGATGGCTTCTCAACTATCAGAAGTTTCACCATTTACTTCAAGGAGGCATATGGCCTATTATCGTTGATTATGTGTTTAAGCTGA___AAGCTGGCAAAACACATTTATGATTTAATATAGCTTAGTTATACTGCTAATAAAGTTTCAGGTTTATGATTGGAGTATATTCAAATGTGGAGGTAGAAAAATGAATGTACGCGTGCATCTGATTATTGATGTATGCAGAGGAATATCATGGGAAGAGTCGATAATTCTATATTATAATATTATTTAGAGCTTTGGAGGTAGAAAAATGGATTTACATGTGCATCTGATATATGCACAGGAATATCATGGGAAGATTCTATAAATCTATATTATGATATTG

Fln Alignment:

Contig3996___ILAGKHMVGGKDVVQVLGRSAFHDTSLVCSGELAYLGGSWSKTVGCAG-DIPLQGDFCASHMIYGVEGVDPARREKLIELLDIDLGWKMHKVSDGQRRRVQICMNLLHPFKXXXXXXXXXXXXXXXXXXXXXFLREECEQRGATIVYATHIFDGLESWVTHVAYIEDGKLKRFEKLSELNEMRNAINLLQVVESWLRAENKDK
D5AC52_______________ILGGKHMVE-PHMVRVLGRSAFHDTSLTSSGDLCYLGGEWRRDVAFAGFDVPLQMDISAEKMIFGVHGIEPQRRDRLIKVLGVDLRWRMHNVSDGQRRRVQICMGLLQPFKVLLLDEITVDLDVLARADLLSFLKHECKDRGATIIYATHIFDGLDNWPSHIAYVARGKLQLALPLEEVEEMKE-LSLMRTVEKWLRKEKEEE

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
84		33		66	0.997452
85		33		66	0.997452
91			66	33	0.997452
93			66	33	0.997452
96	66	33			0.997452
97			66	33	0.997452
115	80	20			0.995493
117	83			16	0.994512
118		16		83	0.994512
122		16	83		0.994512
123		16		83	0.994512
125		83		16	0.994512
126	83		16		0.994512
128		16	83		0.994512
133		16	83		0.994512
134	16		83		0.994512
135		16	83		0.994512
241	75	25			1.0
243			75	25	1.0
246	75			25	1.0
247			25	75	1.0
248	25			75	1.0
249		25		75	1.0
252			75	25	1.0
253			25	75	1.0
257	75		25		1.0
261	10	90			0.90298
262	70			30	1.0
264	90		10		0.90298
266			80	20	0.999996
270			10	90	0.90298
271	90	10			0.90298
274		10	90		0.90298
276		10	90		0.90298
278	10		90		0.90298
443		10		90	0.90298
448	90	10			0.90298
453		10	90		0.90298
454	10			90	0.90298
455		10	90		0.90298
456			90	10	0.90298
458	10		90		0.90298
488	87	12			0.992554
490	87			12	0.992554
491	12		87		0.992554
492		12		87	0.992554
497	87	12			0.992554
500	75	12		12	0.975346
502	75	12			0.975346
504	85	14			0.993533
505			85	14	0.993533
508	14		85		0.993533
510	85	14			0.993533
530	85			14	0.993533
533			18	81	0.999994
535			10	90	0.90298
536	10			90	0.90298
537		10		90	0.90298
538		10	90		0.90298
539	90			10	0.90298
562	10	90			0.90298
563	90	10			0.90298
565		10	90		0.90298
566	10			90	0.90298
694	71		28		1.0
695	71			28	1.0
697	60		40		1.0
698	60			40	1.0
699	60		40		1.0
703		40		40	1.0
704		20		40	1.0
705		75	25		1.0
706	37		62		1.0
707	37	25		37	1.0
708		37		62	1.0
710		37		62	1.0
711		62	37		1.0
713		37	50		1.0
716	50			37	1.0
717		50	37		1.0
718		62	37		1.0
719	12	87			0.992554
720	62			37	1.0
727		37	62		1.0
728	62			37	1.0
729		37		62	1.0
730	37		62		1.0
741		18		81	0.999994
742	81		18		0.999994
749		18	81		0.999994
754	81		18		0.999994
760		18		81	0.999994
938	14		85		0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain