SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3880

Length: 1163 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3880

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13279	50/51

Source	Descriptions	Term	Type	Identity
AutoFact	Coatomer subunit gamma (Fragment) n=4 Tax=rosids RepID=D7TQ06_VITVI	-	-	82%
FL-Next	sp=Coatomer subunit gamma-2; Oryza sativa subsp. japonica (Rice).	-	-	73%
Blast2go	coatomer subunit gamma	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	90%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	90%
Blast2go	clathrin binding	GO:0030276	Molecular Function	90%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain	IPR015873	-	-
Sma3	Coatomer gamma subunit	IPR017106	-	-
Sma3	Coatomer, gamma subunit , appendage	IPR014863	-	-
Sma3	Coatomer, gamma subunit, appendage, Ig-like subdomain	IPR013040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q6Z382

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 212 - 889

Fln protein: S*PWLSLKVLENVHVIVDASEAEEFSEVVSKPLTSLPWLSLKTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATGDVEEEGVEDEYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHENCC*

Protein Length: 213

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTTGGAAAATGTTCATGTAATAGTAGATGCATCCGAGGCAGAAGAATTTTCTGAAGTGGTATCTAAACCTCTAACGTCGTTGCCTTGGCTGTCCCTGAAGACTTTTGTGGCATTTGAAAAACCAGAAGGAGCTTTGTCTACTGGAAAATTTTCAAATATGCTGAAATTTGTTGTGAAGGAGGTTGATCCTGCTACTGGTGATGTAGAAGAGGAGGGAGTTGAAGATGAATATCAACTTGAGGACCTAGAGGTGACTCCAGCTGATTACATATTGAAGGTTGGAGTTTCAAATTTCAAAAATGCGTGGGAGTCCTTAGGGGCAGACTTTGAACGTGTTGATGAGTATGGTCTTGGTGTGAGGGATAGCTTGTCAGAGGCTGTACAGGCAGTAATCAGTCTTCTTGGAATGCAGGCTTGTGAGGGTACTGATGTTGTCTCAAGCAATTCACGTTCACACACTTGCCTATTGGCTGGTAGATTCATTGGCAATGTTCAAGTACTAGTTAGACTGTCGTTTGGCATTGATGGACCTAAACAAGTTGCTATGAAGCTTGCAGTGCGGTCGGAAGACCAATTTGTAAGTGATGCCATACATGAAAATTGTTGCTAA___TGGCTAAGGGTGCAGATATCTTTCATCATTCCAAGCCGTTGGTTGATGAAGAAAATGCAAATACATTTGCTCTATCTGGTAGATATTTCCACTACCATATCGATTTTCCATAGTGTGCTAACTTAAGCACCTCCCCGAGAATATGCTTGTAGTGCGAATCATGCATTTTATTTCTGAGTTTATCCCAAATGGTGTTTCAAATAACCTGTGGAGGGCAGGTTAAAGCTATAGCTTCTTAGTACTTATTGATTCGTTTCATTTATGTTTTCCTTTTTAATATTGAAAGTGGGTTTTGAAGGAACAAAATGCTAACAATGCTGATGATTTTACCCTGAAGGGGTTTGTTCCATTTGAGGTTTTTTGTAACAGTACATCATTCAAAGAGCTAGAGATGTAAGACTCTTGATATGGCACATAAAAAGAGATCTAGATCTGTAAGACTCTGGTATGAATTTTTCATATTTTACAGAACTTGTGGCATATTTAGTGGCAATAATTTTCTCTGAAGTTATTTGTTCGTTACAT

Fln Alignment:

Contig3880___KVLENVHVIVDXXXXXXXXXXXXKPLTSLPWLSL-KTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATXXXXXXXXXXXYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHE
Q6Z382_______________QLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHE

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
333			16	83	0.994512
338	16		83		0.994512
339		16	83		0.994512
340			83	16	0.994512
341	83	16			0.994512
342	16		83		0.994512
421		20	80		0.995493
423	80			20	0.995493
424	80	20			0.995493
425			20	80	0.995493
634			66	33	0.997452
635			33	66	0.997452
648	75		25		0.996473
649	75			25	0.996473
650		25	75		0.996473
651	25		75		0.996473
652		25	75		0.996473
661		25		75	0.996473
701		66		33	1.0
702	66	33			1.0
704	66	33			1.0
706	66	16			0.988813
707	16	83			0.994512
721		14	85		0.993533
727		14		85	0.993533
728	85	14			0.993533
731			14	85	0.993533
732		85	14		0.993533
734	85			14	0.993533
735		85	14		0.993533
741		12		87	0.992554
742	87		12		0.992554
747		12		87	0.992554
750			12	87	0.992554
752		87		12	0.992554
753	87		12		0.992554
756		12	87		0.992554
787		12		87	0.992554
790			12	87	0.992554
791		11		88	0.923564
792		15	78	5	1.0
793		10	15	73	1.0
794	68	31			1.0
795			89	10	0.999919
799		5	68		1.0
800	68	15		15	1.0
801	68		10	21	1.0
803		78	21		1.0
804	78	21			1.0
809		5		78	1.0
810		15		84	1.0
812	5	11		83	0.999887

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain