SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3852

Length: 1621 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3852

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5096	36/38

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cation transport	GO:0006812	Biological Process	71%
Blast2go	ion channel activity	GO:0005216	Molecular Function	71%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ8

Fln msg:

Fln protein: MGEDLAEAPPPPPPSTETLQTFPNEPEKSRLISLPRIKFDHDWRKYAAVKLSSEFDSEGNAFINKISARVFHGIAKIKASFQRSGSGEIQSPQLGFVTKYLSILYDHEDRNALVTASANLSQRLQLKLLTDVKAQQGELKVLTSLADSRYKVEVSCDVPRIGVPRAVVTFPIGEVKLEDMIQDERRVLSMNGFVAGNLMKGLCVAEYNDNNLNLKYKYKDEEMTITPSISLPSNELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKETLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRLKKRIDL*

Protein Length: 336

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGTTTTGGTTTTATTGGTGTTAAA_-_ATGGGGGAGGATTTGGCCGAAGCTCCGCCTCCGCCTCCGCCAAGTACAGAGACATTACAGACATTTCCCAACGAGCCCGAAAAATCCCGCCTTATAAGCCTTCCCAGGATCAAATTTGACCACGATTGGAGAAAATACGCGGCCGTGAAGCTTTCCTCGGAGTTTGACAGCGAGGGGAATGCCTTCATCAACAAGATTTCGGCTAGGGTGTTCCACGGGATTGCGAAGATTAAAGCTTCGTTTCAGAGGAGTGGCAGTGGCGAGATCCAGTCCCCGCAGCTAGGTTTTGTGACGAAGTATTTATCGATTTTATATGATCATGAAGATCGCAATGCGCTTGTTACGGCTTCAGCCAATCTCTCGCAGCGACTTCAGCTCAAGCTACTTACTGATGTTAAGGCCCAACAAGGAGAATTAAAAGTGCTTACAAGCTTGGCTGATTCTAGGTATAAAGTTGAAGTATCATGTGATGTACCGAGAATTGGTGTGCCCAGGGCAGTTGTAACATTCCCCATTGGTGAAGTCAAATTGGAGGATATGATCCAAGATGAACGTAGAGTCTTGTCTATGAATGGATTTGTTGCAGGGAACCTTATGAAGGGGCTGTGCGTGGCAGAATACAATGATAACAATTTGAATCTGAAGTACAAGTACAAGGATGAAGAAATGACTATTACACCAAGCATATCTTTACCGTCAAATGAGCTATCCCTTGGATTCAAACGACAGTTTAATCCCTTGAATAAGTTGAGCTATTTTTATGATTTCAATTCCACTGCATGGAGTGCTGTCTACAAACATCAACCTATTGATGATTTCAAAGTAAAAGTAGGTTATGATTCTAAAGTTCGACTTGGATGGGCCTCAGCTTGGGTTGGCAAAGAGACTTTAGGTGCTAAAAAGGCACCAATGAAGGTCAAATTTCAGGTCATGTTGCAAGTTCCCCAAGACGATGTAAAATCATCTGCTGTGCTATTCAGGTTGAAAAAACGAATAGATTTATAA___TTGTTTCATCACATTCAAGTGGGTTGTTTCATCTGTAGTAGTGCCTTAATGGCATTCTTAACATCTCAGAATCAGTTTGTAATTTATTTTTGCGTGCAACGTTTTCTGCATCTACAGAAGACAAAAATATCCCTGCAGTCGGATATGTTTTTGGTCTGAAATAATACAGCAGCTTCACATCTCATCATGTTGTTTTTTCCTCAAATGTTTAGCAAAGTTGAGGGTTTCATTCACAACCTGTTGCTTAGTTGAGGGATTGTTTGGGTGGATTGTGTGGTACTTGTCATTTTGGCATGAGTGCACTACTGGCATTGAAACGTCTTATTCTGAGATGCTTCCAGGTTAAGATTGATTTTGAGGTTACATATCTTTGTTGTGTGTCTCTTTGATAATTTTTATTTGATGGTTGGCATTCTGGTACTAGTTGTTATAGAAAACACTAATCTGGAAAAGCACCATCAGGAGATTGGTGGTTTGCATCCCTCAAGAGGTTAATTACAAATTTGGCTACAATATTATGTAAAAAGACACCAAAAGAGAGGCAAAATTTAGAAGACTTGAACT

Fln Alignment:

Contig3852___MGEDLAEAXXXXXXSTETLQTFPNEPEKSRLISLPRIKFDHDWRKYAAVKLSSEFDSEGNAFINKISARVFHGIAKIKASFQRSGSGEIQSPQLGFVTKYLSILYDHEDRNALVTASANLSQRLQLKLLTDVKAQQGELKVLTSLADSRYKVEVSCDVPRIGVPRAVVTFPIGEVKLEDMIQDERRVLSMNGFVAGNLMKGLCVAEXXXXXXXXXXXXXXEEMTITPSISLPSNELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKETLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRLKKRIDL
A9NMZ8_______________MGEDLVEAPPSPPPNAEPLQTFSNESKKSRFISLPRIKFDGDWRKYAAVKVSSEFDSEGSVFFNKISARVFDGIAKIKGSFQRSGSGEIRSPQLGFVTKYLSVLYDHEDRNTLVTASADLPKRLQLKLVTDVQAQQGELKLLTSLADPRYRAELSCDVPSIGLPRAVVTFPNGEVKLEDEIQDQRRVLSINGFVAGKFMNGLCMAGYNDNNVNLKYKYKDEEMTIVPSISFPSKELSLGFKRQFNPLNKLSYFYDFNSTAWSAVYKHQPIDDFKVKVGYDSKVRLGWASAWVGKENLGAKKAPMKVKFQVMLQVPQDDVKSSAVLFRVKKRVDL

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
368		16	83		0.994512
369	83		16		0.994512
372	66		33		1.0
373		16		83	0.994512
376	80	20			0.995493
377		20	80		0.995493
378	80			20	0.995493
380		80	20		0.995493
383	80			20	0.995493
384	80		20		0.995493
388	20		80		0.995493
391		20		80	0.995493
392	20		80		0.995493
437		80		20	0.995493
439		20		80	0.995493
440	80		20		0.995493
743			20	80	0.995493
745			20	80	0.995493
749			80	20	0.995493
751		80	20		0.995493
752	80	20			0.995493
753	80			20	0.995493
754	80		20		0.995493
756		16	83		0.994512
763	75		25		1.0
766	25	75			1.0
773	75	25			1.0
779	75	12			0.975346
780	87			12	0.992554
782	12		75		0.975346
783	87			12	0.992554
796			20	80	0.999996
798		10	90		0.90298
799	90		10		0.90298
801			10	90	0.90298
802	90			10	0.90298
804		10	90		0.90298
805		10		90	0.90298
809	10		90		0.90298
813	10			90	0.90298
814		10		90	0.90298
815	10			90	0.90298
816		10		90	0.90298
818	90	10			0.90298
819	10			90	0.90298
1044	88		11		0.999952
1045	87			12	0.999964
1046	87	12			0.999964
1050	68	12			1.0
1254			75	25	1.0
1255			28	71	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
75	93	CTCCGC CTCCGC CTCCGC C	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain