SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3764

Length: 1356 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3764

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17353	44/53
SustainPine v2.0	sp_v2.0_unigene79455	7/53

Source	Descriptions	Term	Type	Identity
AutoFact	Probable ubiquitin activating enzyme 2 (Fragment) n=3 Tax=Picea RepID=O65078_PICMA	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	sumo-activating enzyme subunit 1b	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein sumoylation	GO:0016925	Biological Process	0.0	80%
Blast2go	SUMO activating enzyme activity	GO:0019948	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG1

Fln msg: your sequence is shorter than subject: 209 - 323

Fln protein: VVTLAVTHFDAVVLGRASVIVKKQVNEMCRKRPQIIAFYSVDCRGSCGEIFVDLQSHTYTQKNQEDAVASQICFPSLEESMSVRWSSLPRKTTKLYFALRIIEEFEQAEGRQPGHVSSADLESVLSLQKKLCEEQGLSESRIPDILLERILDAGTRELPPVCAILGGILGQEVIKAMSCKGDPIKNFFFFDVMDGKGIIEDISNQGKS*

Protein Length: 210

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGATGCTGTTGTTCTTGGGCGCGCCTCAGTTATTGTGAAAAAGCAGGTTAATGAGATGTGCCGCAAAAGGCCACAAATAATTGCATTTTATTCAGTGGATTGTAGAGGTAGCTGTGGAGAAATATTTGTTGATTTGCAAAGCCACACATACACTCAGAAAAATCAGGAAGACGCTGTTGCTTCTCAAATTTGCTTTCCAAGCTTAGAGGAGTCCATGTCAGTTCGCTGGAGTAGTCTTCCTAGAAAGACAACTAAGCTCTATTTTGCTCTAAGAATTATAGAAGAGTTTGAGCAAGCTGAGGGTCGACAACCAGGTCATGTCTCATCTGCAGATTTGGAATCTGTGCTGAGCCTCCAGAAGAAACTCTGTGAAGAACAAGGTTTATCTGAATCTCGAATACCAGATATTCTCTTGGAAAGAATTCTTGATGCCGGGACAAGAGAACTCCCTCCAGTTTGTGCAATTTTAGGGGGCATCCTTGGCCAGGAAGTCATCAAGGCAATGTCATGTAAAGGTGATCCGATTAAGAACTTTTTCTTCTTTGATGTAATGGACGGGAAGGGGATAATAGAGGATATATCTAACCAAGGCAAAAGCTGA___AGCTCTGAATTTCTTAGAGAAGTCGATATCATGGAAATCATGTGCAGAACTGCACTTCAAGCAAATTGAGGAGAATGTGTGTATCTTTCTGTGTGAATGATGGATTTGTGTCATCATTATATGCAAAGAGCATGGCAATGGTATTGAACAGGCATGCAGTTGCATTCAGCCAGTATAGACCTCTATAGTAGATAAGCTTAGCAGCAGGTGGAGACCAATAAAAATTTCAAGGTCGTGTGCACTTTAACTTGATAATAAGGATGCCAAACTTTTCAACAGTATGAACAAAATCTCACATAAGCAACCATTAGATTGGATAATATTTTAACATTAAAAGAGATTCATTACTTATGCTCATGCTTGATCTTTGAAAATGCTTTTCTCAGAATGTTTACATATGATATATTTTATGTTGTGGCTAAAGGTTAGTATACTAGTTTGTGTTCCGTGCCAAATTGATTTAGTACTGTGAAAGAAACTGGATTAAGGACATTGCAGATTATACTGCAGCAGTTATTCTGGGCATTTTTTTCTGATACAATTAGTTTATTCAAAGCATCAGCAAAGAGTGATGTCCAGTAGATAGGTGCTTATTATATGGCCTAGGTAAATGTGATGGGAAAATTCCACAAATAGGGCTATTGTTGTTTTGTTTTGCTTTAATTTTTCAACTGCTTCACTTTTTGAACTGGCCCTACATGACAACAGTGAACATGGGTCACTGACAG

Fln Alignment:

Contig3764___HFDAVVLGRASVIVKKQVNEMCRKRPQIIAFYSVDCRGSCGEIFVDLQSHTYTQKNQEDAVASQICFPSLEESMSVRWSSLPRKTTKLYFALRIIEEFEQAEGRQPGHVSSADLESVLSLQKKLCEEQGLSESRIPDILLERILDAGTRELPPVCAILGGILGQEVIKAMSCKGDPIKNFFFFDVMDGKGIIEDISNQGKS
D5AEG1_______________NFDAVVLGRASVIVKKQVNEMCRKRPQRIAFYSVDCRGSCGEIFVDLQNHTYTQKKQEDAIASQIFFPSLEESVLVRWSSLPRKTTKLYFALRIIEEFEQAEGRQPGHVSSADLESVLILQKKLCEEQGLSESRIPDILLERILDAGTRQLPPVCAIIGGILGQEVIKAMSCKGDPIKNFFFFDVMDGKGIIEDISNQDKN

SNPs (tot: 126)

Position	A %	C %	G %	T %	Probability
117	75	25			0.996473
123		25	75		0.996473
126		40	60		1.0
127	80		20		0.995493
129		20		80	0.995493
136		20	80		0.995493
137			80	20	0.995493
139	80		20		0.995493
146		20	80		0.995493
148		20	80		0.995493
149	80			20	0.995493
150	80	20			0.995493
223			33	66	1.0
225		33		66	1.0
226		66	33		1.0
227		66		33	1.0
228	66		33		1.0
230		33	66		1.0
238		33	66		1.0
239	66			33	1.0
246		33	66		1.0
250			83	16	0.994512
289		14		85	0.993533
290	85		14		0.993533
292		16		83	0.994512
293			16	83	0.994512
296	16	83			0.994512
297		16		83	0.994512
301	83			16	0.994512
303	83		16		0.994512
304	83	16			0.994512
306			16	83	0.994512
307	83			16	0.994512
308		16		83	0.994512
310		16	83		0.994512
311	83			16	0.994512
312	83	16			0.994512
313	16		83		0.994512
368	85	14			0.993533
369	85		14		0.993533
374	14			85	0.993533
375		14	85		0.993533
378			85	14	0.993533
379	85		14		0.993533
382		85		14	0.993533
383			14	85	0.993533
384		85		14	0.993533
386	87	12			0.992554
387		12	87		0.992554
388	75			25	1.0
389	75	25			1.0
390	12		87		0.992554
391	87			12	0.992554
392	87		12		0.992554
398			87	12	0.992554
399			12	87	0.992554
401	87	12			0.992554
402	87			12	0.992554
404	87	12			0.992554
407	85	14			0.993533
427	85	14			0.993533
428			14	85	0.993533
429	85			14	0.993533
431		85	14		0.993533
432	85			14	0.993533
435		14		85	0.993533
436	85	14			0.993533
439		85	14		0.993533
440			16	83	0.994512
445			83	16	0.994512
446	83	16			0.994512
448	83	16			0.994512
449			80	20	0.995493
450	80	20			0.995493
459		28		71	1.0
461		71		28	1.0
464			71	28	1.0
468	71	28			1.0
469	71			28	1.0
470			71	28	1.0
471	71		28		1.0
473	71	28			1.0
474	71			28	1.0
475		71	28		1.0
478	28	71			1.0
482	14	85			0.993533
512	18		81		0.999994
541	84	15			0.999986
542	84		15		0.999986
543	84			15	0.999986
544		15	84		0.999986
549		15		84	0.999986
551		84		15	0.999986
553	84		15		0.999986
554		15		84	0.999986
557	84		15		0.999986
558			84	15	0.999986
559	84	15			0.999986
814		15		84	0.999986
815	84		15		0.999986
817	84	15			0.999986
821		15	84		0.999986
822	84	15			0.999986
824	84			15	0.999986
825	83		16		0.999991
830	81	18			0.999994
831	18		81		0.999994
833	81			18	0.999994
834		18	81		0.999994
835	20	80			0.999996
843		70	30		1.0
873		33		66	1.0
963	60	20	20		0.99255
964	60		40		1.0
965	60	20		20	0.99255
966	60	20		20	0.99255
968	60			40	1.0
969		20	80		0.995493
975		20		80	0.995493
977	80			20	0.995493
979			20	80	0.995493
980	80		20		0.995493
983			20	80	0.995493
984	80			20	0.995493
985		20		80	0.995493
986	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain