SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3748

Length: 1438 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3748

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13823	66/76
SustainPine v2.0	sp_v2.0_unigene24512	1/76
SustainPine v2.0	sp_v2.0_unigene24574	4/76
SustainPine v2.0	sp_v2.0_unigene83303	2/76

Source	Descriptions	Term	Type	Identity
AutoFact	succinate dehydrogenase 5 [Arabidopsis thaliana] sp\|Q9SX77.1\|UMP6_ARATH RecName: Full=Uncharacterized protein At1g47420, mitochondrial; Flags: Precursor gb\|AAD46040.1\|AC007519_25 ESTs gb\|H36253 and gb\|AA04251 come from this gene [Arabidopsis thaliana] gb\|	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	succinate dehydrogenase 5	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTS6

Fln msg:

Fln protein: MELDEMTGQTGENVRPLPEEVQDAIRAAYKRYSNYLDAFGPDETYLRKKVETELGRHMIYIKMRVSGLDAEWGKVTLLGTSGLSGSYIEQRS*

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTGTAAACGGAATCGGCCGTGTGGAAAACTGTTGTGCTCCCTTGTAAACTGAGCGTGCAGTGCCGAACTTCGAATTAGCGAATTCCGTCGTGACCTTGGCTGTCACTCATATTTTCAAATTTTTTCTATTGCGATTGTGTTCTTCTTTTAGCTGTCCATTAATTTCAAGAACGTTGGGGCCTGCGTTCACAGCAGTTCTCACACGCCCCAGCCAGCACTGCGATACCCTTGCCTGCATCAGCGGCCTCCCTTGCCTTCATTAGCGGTTCCTGAAAGGTTTCTTCAGCCTCGGCCATTCGTCCCGAGGTCGATCCGAGCGAGATCGAGTCCGTGGCAGGAGCATCGTTCTACAGTTCTCAAGCTGGTTGTTGGAAGGCAGGGAGTAATGGCGAGTCTATTTGTAGCCAGGCTTGGTACACCCTCCAGGTTGAAGCCTGTACTAGCGCATCTTTCGCGAGCAAATATATTGTCAACACTTCTAGTTGGGGGGCATGAACATGTTCGGAATATAACTTCTCATGTGGCACAGGATGCTTGGGCTGGTAGAAAAGATCTCAGGCTTCCATTTGCGGTCAAAACTCCTATACGATCATTTAGTTCGGACACAAATGCATTACCCGAAGTAACAGACCTTGATGTTAAGAATGCACTCAAGGATGTCTTGGCTGCAGATTGGGAGGAGCTTCCTGACCCTGTACAGGCTGATGTTATGAATGCATTGTCAAAGAAACCGATGATAAGGCTGGCAGGAAGCTTTAACAAATGCCTAGCGTGCAGCTGAGGCCGTCGTGACCTTGGCTGTCACTCATTTGGAATCCTTGAGA_-_ATGGAGCTAGATGAAATGACTGGGCAGACAGGCGAGAATGTGAGACCTTTGCCAGAGGAAGTTCAAGATGCCATACGGGCTGCATATAAACGTTACAGCAATTACTTGGACGCATTTGGCCCGGATGAAACCTATTTGAGAAAGAAAGTTGAAACAGAGCTAGGCCGTCACATGATTTACATAAAGATGCGAGTTAGTGGGCTTGACGCAGAATGGGGAAAGGTTACACTTCTCGGGACATCTGGACTTTCTGGCTCGTACATTGAACAACGTAGTTAA___CCTTGTTAAAGCTATCCTGAAAGGTCGGGGATCAAATTTTAATATAAAGCTTGCTGAACCTTGAGTAGTCAAATTTTCAATGTATTTATGCATAGCAAGTTTTAGGTAGAAGATGTGTGCATCATTTGCGCACTTGCTGATATTCACCAGGAACTGGGTTAGTGATGCTGTTTGTTTCTGTGAAGGCTCTATTGATATAGATTCTGGGTTTGTGCAACAAACTTGTAGTTGAAGAGAATAAAAGAATGGCATTCTACATCATGTCTCTTTGACACGGAAGAATCTGGCCTAATTATATAGATTGTTTTTCC

Fln Alignment:

Contig3748___MELDEMTGQTGENVRPLPEEVQDAIRAAYKRYSNYLDAFGPDETYLRKKVETELGRHMIYIKMRVSGLDAEWGKVTLLGTSGLSGSYIEQR
C0PTS6_______________MELDDLTGHTGENVRPLPEEIQGALRAAYKRYSNYLEAFGPDETYLRKKVETELGRHMIYIKMRCSGLDAEWGKVTLLGTSGLSGSYIEQR

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
597		60		40	1.0
628	20		80		0.995493
633		80		20	0.995493
636	80		20		0.995493
646		60		40	1.0
647		20	80		0.995493
660		20		80	0.995493
674			80	20	0.995493
676	80	20			0.995493
680	75		25		0.996473
922	66		33		0.997452
927	66	33			0.997452
936			66	33	0.997452
940	66	33			0.997452
968	75		25		0.996473
970			25	75	0.996473
973	25		75		0.996473
975		75	25		0.996473
976		75		25	0.996473
979	75	25			0.996473
982	75			25	0.996473
983	75	25			0.996473
990			25	75	0.996473
994	25		75		0.996473
1001	75			25	0.996473
1078		22		77	0.999999
1079			11	88	0.923564
1086		88	11		0.923564
1087			11	88	0.923564
1090			88	11	0.923564
1092	88			11	0.923564
1099		11	88		0.923564
1116	90	10			0.90298
1121	90		10		0.90298
1125		90		10	0.90298
1128	90	10			0.90298
1129	10		90		0.90298
1130		10		90	0.90298
1132	90	10			0.90298
1393	12			87	0.992554
1423		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain