SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3704

Length: 744 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3704

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10183	31/32

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] ref\|NP_001031992.1\| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gb\|AAM60900.1\| CMP-sialic acid transporter-like protein [Arabidopsis thaliana] gb\|AAO42302.1\| putativ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	nucleotide-sugar transporter family protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	84%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	84%
Blast2go	CMP-N-acetylneuraminate transmembrane transporter activity	GO:0005456	Molecular Function	84%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-sugar transporter	IPR007271	-	0.0	-
Sma3	UDP-galactose transporter	IPR004689	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
100		11		88	0.923564
105		88	11		0.923564
109	88			11	0.923564
115	88	11			0.923564
118		88		11	0.923564
119	88			11	0.923564
193		90		10	0.90298
200		90		10	0.90298
201			80	20	0.999996
203	90		10		0.90298
206		90	10		0.90298
207	90			10	0.90298
210	90			10	0.90298
220			23	76	1.0
221	23	76			1.0
222		23		76	1.0
226		76	23		1.0
227	76		23		1.0
229			76	23	1.0
231			76	23	1.0
232		23		76	1.0
233	23			76	1.0
346			8	91	0.999766
350			8	91	0.999766
354	90		9		0.999842
358		90	9		0.999842
362	90	9			0.999842
363			89	10	0.999919
364		10	89		0.999919
543		88		11	0.923564
546			11	88	0.923564
611		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain