SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3680

Length: 1238 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3680

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2172	24/25

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF383 multi-domain protein	-	-	8.00001e-41	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	binding protein	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Uncharacterised domain UPF0507	IPR007205	-	-
Sma3	Uncharacterised domain UPF0507, C-terminal	IPR007206	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD17

Fln msg: your sequence is shorter than subject: 279 - 334

Fln protein: RRDLGCHSALEALVNLSQETALSGELVEVGMIERAMEILGRADICINQLLSMLLVNLTQLDSGVERLLQVGDEKLQGLYLAKLVRLFNISSTENEGKEDPYGHIGSVLVNISRMEIGRKLVVTLAVTHFKIIIRQSDSPSLLRRKGVSGTIRNCCFDAETQLSNLLLTSQFFWPALLLPLAGKQVYSKEDTNKMPLELANPLSHERDPEKDPEIRVQAAESLYLIAMQEGGRRGLWSVNGPRILEVGYQDEEDPQVMEGYERLGSLLIHGSGLEEDIK*

Protein Length: 280

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGTTGGAAGCCCTAGTTAATCTGTCACAGGAGACTGCATTATCAGGAGAATTGGTTGAGGTTGGGATGATAGAAAGGGCTATGGAGATTTTGGGCAGGGCAGATATATGCATAAATCAGCTGTTGTCAATGCTTCTTGTCAATCTCACACAACTAGATTCAGGTGTTGAGCGCCTGCTTCAGGTAGGAGATGAAAAATTGCAAGGTCTTTATCTAGCCAAGCTTGTGAGACTATTTAACATATCTTCCACAGAAAATGAAGGAAAAGAGGACCCATATGGACACATTGGATCTGTACTTGTCAATATATCTAGGATGGAAATAGGGAGAAAGCTCGTCGTGACCTTGGCTGTCACTCATTTCAAAATAATAATTCGGCAATCTGATTCGCCAAGCCTTTTGCGAAGGAAAGGGGTTTCAGGCACCATTCGGAATTGTTGCTTTGATGCTGAAACACAGCTGTCCAATTTACTTCTTACCTCTCAATTTTTCTGGCCTGCTCTTCTACTACCTCTTGCAGGAAAACAGGTCTATAGCAAAGAGGATACAAACAAAATGCCACTTGAGTTAGCTAATCCACTTTCTCATGAGCGTGATCCAGAGAAGGACCCAGAAATTCGAGTGCAAGCTGCCGAGTCACTTTACTTGATTGCAATGCAGGAAGGAGGACGTAGGGGACTTTGGTCAGTTAATGGTCCAAGGATACTAGAAGTTGGTTATCAAGACGAAGAGGATCCTCAAGTAATGGAGGGATATGAACGCCTTGGTTCCCTGCTCATTCATGGTAGCGGATTGGAAGAAGACATCAAATGA___ACACCGGGGGCACAATTTCAAGAATGGTGTCATGCCATTAAATAAGAACATTCACAAAATTTGTTGCATCACTATTGTATTCTAGTTAATGCATGTGTATACATATGCTTAAAAGTTTCTGCAATTTTAAAGCGTGACCTTTTTTTTGAAAGTGAAAATCCATCGGTTTGGTATATCTAGAATGGGTAGGGATTAGTCCTAAACAGCTACAAGCATAAAAAATGATTGGATCCTATTATGTTTTCCGTAAGTTATATTTGATCCTAAGAACAATTTTAGCCTTTACCTTGTAACACTGCGGTTTTCCTTCATTTCCTAATTTACTTGGGGTCTTTAATCTTACCTACAAGACCATGTTTGAAAATTTTTAGTATAAAGTTAGCTTATGCAATTCTCTGTTC

Fln Alignment:

Contig3680___ALEALVNLSQETALSGELVEVGMIERAMEILGRADICINQLLSMLLVNLTQLDSGVERLLQVGDEKLQGLYLAKLVRLFNISSTENEGKEDPYGHIGSVLVNISRMEIGRKLVVTLAVTHFKIIIRQSDSPSLLRRKGVSGTIRNCCFDAETQLSNLLLTSQFFWPALLLPLAGKQVYSKEDTNKMPLELANPLSHERDPEKDPEIRVQAAESLYLIAMQEGGRRGLWSVNGPRILEVGYQDEEDPQVMEGYERLGSLLIHGSGLEEDIK
D5AD17_______________ALEALVNLSQETALSGKLVEIGMIERAMEIFGKSDLCISQLLSMLLVNLTQLDSGVEHLLQVGDEKLQGLYLAKLVRLFSLSSTENEGKEDPYGHIGSVLVNISRMEIGRKLLLDPKRSLLKIIIRQIDSPSLLRRKGVSGTIRNCCFDAETQLSNLLLASQFLWPALLLPLAGKQAYSKEDTNKMPLELANPLSHERDPEKDPEIRVQAAESLYLIAMQEGGRRALWSVNGPRILEFGYQDEEDPQVMEGYERLGSLLIHGSGLEEDIK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
430	83			16	0.994512
431	83	16			0.994512
435	83			16	0.994512
436	83			16	0.994512
439			83	16	0.994512
442		16		83	0.994512
505		75	25		1.0
510		75	25		1.0
512	71	28			1.0
513		28		71	1.0
516			28	71	1.0
517			28	71	1.0
521			71	28	1.0
526	14		71		0.984337
528	14			85	0.993533
643	75	25			1.0
644			25	75	1.0
648	75			25	1.0
650	25			75	1.0
651		25	75		1.0
654	75			25	1.0
655	75		25		1.0
660		75		25	1.0
664		25	75		1.0
700	40		60		1.0
856			90	10	0.90298
858	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain