SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3676

Length: 1463 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3676

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5541	30/33
SustainPine v2.0	sp_v2.0_unigene10282	3/33

Source	Descriptions	Term	Type	Identity
AutoFact	SCL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJB4_MALDO	-	-	45%
FL-Next	tr=Short-root; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	30%
Blast2go	nodulation signaling pathway 1 protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3	Fungal mating-type pheromone	IPR012597	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B4XI11

Fln msg: your sequence is shorter than subject: 428 - 502

Fln protein: RRDLGCHSNNSSNSNNKSRSGGRQSSPPNLPKESRWAEQLLNPCAVAIANNNIVRIQHLIWVLHDLASISGDANHRLAAHGLRAFTAKIMHPGASLPCSEFLSADPKLFHKALIKFHEVSPWYQLLYTIANKYLLEAFEGQNSKALHVIDIGVSHGIQWPHSWRHWPEDQLGLLVS*G*LS*QTLLGHPFPLALLPMTSPTV*RGMQRLCNLDMEVNVIAQPLDSLTREALGIKEDEALAICGQFRLHQLLGEGLDKNEGKDNQLTSVCPRDKFIKFIKDLNPLVFFLSDNDIDHSSPDFIERFKNSVDHLWRFLDSTSVCFKGRECEERRMVEGEAAMGLVNNVAYDGASRVERNENHLNWANRVREEGFVCEIPSDKIIDCARAMLRKHDSNWEMRLEDGCISLCWKSHPVTFCSLWKPCFNEPT*

Protein Length: 429

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACAACAGTAGCAACAGCAACAACAAAAGCAGATCAGGTGGACGCCAGAGTAGTCCACCTAATCTTCCCAAGGAATCGAGATGGGCTGAACAACTTCTAAACCCTTGTGCAGTAGCTATAGCCAACAATAACATTGTTCGCATTCAACATCTCATATGGGTCCTCCATGATCTTGCATCAATCTCAGGTGATGCAAACCATAGGCTTGCAGCACATGGGCTGAGAGCTTTCACTGCCAAGATCATGCATCCTGGCGCGTCTCTTCCTTGCTCGGAATTCCTCTCTGCAGATCCAAAGTTGTTTCACAAGGCTCTTATCAAGTTTCATGAGGTAAGTCCATGGTATCAGTTGCTGTACACCATAGCCAATAAATATCTACTGGAAGCCTTTGAAGGCCAGAACAGTAAAGCTCTTCATGTAATAGACATCGGTGTTTCTCATGGAATACAATGGCCACATTCATGGAGGCATTGGCCAGAAGACCAGCTGGGCCTCCTAGTCTCCTAAGGCTAACTATCATAGCAGACACTCTTGGGGCACCCTTTTCCGCTGGCCCTCCTTCCAATGACTTCCCCAACCGTTTGAAGAGGTATGCAAAGACTTTGTAACCTTGACATGGAAGTCAATGTCATTGCACAACCCCTAGATTCCCTAACCAGGGAAGCCCTAGGGATCAAAGAAGACGAGGCATTAGCAATCTGTGGACAATTTCGTCTTCATCAACTCTTAGGGGAGGGCTTGGACAAAAATGAAGGCAAAGACAACCAGTTAACATCAGTTTGCCCTCGTGACAAGTTCATCAAATTCATAAAGGACCTAAATCCCCTGGTGTTTTTCTTGAGTGATAATGATATAGACCATTCATCTCCTGATTTCATAGAAAGATTTAAGAACTCTGTAGATCATCTATGGAGATTCTTGGACTCAACAAGCGTATGTTTCAAGGGAAGAGAGTGCGAGGAGAGGCGTATGGTTGAAGGCGAGGCTGCCATGGGGTTAGTTAATAATGTAGCATATGATGGTGCTTCTCGTGTGGAGAGAAACGAGAACCATTTGAACTGGGCCAATAGAGTTAGGGAGGAGGGATTTGTATGTGAAATCCCTAGTGACAAAATAATTGACTGTGCAAGAGCCATGCTTCGTAAACATGATTCAAATTGGGAGATGCGTTTGGAGGATGGGTGTATTTCTCTGTGTTGGAAGAGTCATCCTGTCACTTTTTGCTCTTTGTGGAAGCCATGTTTTAACGAGCCTACATGA___GCAGACTCCTTGTTTCACTCCTATTCTGCAAATGCTATGCATCTTTTTCATCATTAGCTTCTATATCCTTGTTTCATATGTATCATACATCGAAATGTACATAATCTTTGGTCCCTTGGATTTGCACTTGGCTTCAAATTCAATGCTTATCTTTAACTGATAACAGAAAGGTTACAAAT

Fln Alignment:

Contig3676___PNLPKE------SRWAEQLLNPCAVAIANNNIVRIQHLIWVLHDLASISGDANHRLAAHGLRAFTAKIMHPGASLPCSEFLSADPKLF-----HKALIKFHEVSPWYQLLYTIANKYLLEAFEGQNSKALHVIDIGVSHGIQWPHSWRHWPEDQXXXXXXXXXXX*QTLLGHPFPLALLPMTSPTV*RGMQ---RLCNLDMEVNVIAQP-LDSLTREALGIKEDEALAICGQFRLHQLLGEGLDKNEGKDNQLTSVCPRDKFIKFIKDLNPLVFFLSDNDIDHSSPDFIERFKNSVDHLWRFLDSTSVCFKGRECEERRMVEGEAAMGLVNNVAYDGASRVERNENHLNWANRVREEGFVCEIPSDKIIDCARAMLRKHDSNWEMRLEDGCISLCWKSHPVTFCSLWKPC
B4XI11_______________PSFPEEFGPAGSRRWASNLLLECARAIAENEKSRTQHLLWMLNELSSPYGDCEQKLASYFLQAFFCKITDTGPRC-YTTLCSAAEKTYSFDSTRKMILKFQESSPWTTFGHVAANGAILESFEGEMK--LHIVDLSNTFCTQWPTLL----EALATRSDDTPHLRLTTVVTNKEATAMKVMKE--IGQRMEKFARLMGVPFEFSVIHQHHLHKLNVGALKIRPDEALAINCIHSLQRVTKNG----------------RDSILSTFYSMNPKIVTVVEDEVDLTHEDFGDCFSECLRFFSLFFDSLEESFS-RTSNERLMLERTSARSIVNILACEDSEVYERREKGAQWAWRLKEAGFIHAAFSDDVVDDVRALLKRYKEGWGHCSNSDGLFLTWKEQCAIWASAWKPC

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
626			33	66	1.0
628		33		66	1.0
631	66		33		1.0
638	66		33		1.0
643			66	33	1.0
644	66	33			1.0
646		33	66		1.0
783	83	16			0.994512
785	83			16	0.994512
787	83		16		0.994512
788	83			16	0.994512
789		83	16		0.994512
790	16	83			0.994512
791	83	16			0.994512
792		16	83		0.994512
795	83		16		0.994512
796	83		16		0.994512
798	83		16		0.994512
801	85	14			0.993533
802		14	85		0.993533
805	14		14	71	0.984337
808	14	85			0.993533
812		85		14	0.993533
816	85			14	0.993533
820		14	85		0.993533
822		14		85	0.993533
823	14	85			0.993533
914	80			20	0.995493
955	77		22		0.999999
956	77			22	0.999999
1000		9	90		0.999872
1003		9		90	0.999872
1005	90			9	0.999872
1006	90		9		0.999872
1007	9		90		0.999872
1008		9	90		0.999872
1010			90	9	0.999872
1011	90			9	0.999872
1017		90		9	0.999872
1021	10		90		0.999898
1093		89	10		0.999919
1094	89			10	0.999919
1095	89	10			0.999919
1096			10	89	0.999919
1097	89			10	0.999919
1100		10	89		0.999919
1101		10		89	0.999919
1103	89			10	0.999919
1106		10	89		0.999919
1107	89			10	0.999919
1109		10	89		0.999919
1111			89	10	0.999919
1112		10	89		0.999919
1113	10		89		0.999919
1317		87		12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain