SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3645

Length: 1236 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3645

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2796	23/26

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase n=1 Tax=Ricinus communis RepID=B9S366_RICCO	-	-	78%
FL-Next	sp=Phosphorylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	alpha-glucan h isozyme-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphorylase.	EC:2.4.1.1	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	88%
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	phosphorylase activity	GO:0004645	Molecular Function	88%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%
Blast2go	cytosol	GO:0005829	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	0.0	-
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV6

Fln msg: Separated hits, possible frame ERROR between 512 and 515, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 259 - 399

Fln protein: S*PWRHSKKLKEMSSEERKNVVPRTVMLGGKAFATYTQAKRIVKLVNDVGAVVNNDPDIGDLLKVVFIPNYNVSVAEILIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNFFLFGAQAHDVPKTTERERAGTVCPRPSF*RSKAVCRKAxxFGDYDYTPLLDSLEGNTGYGRGDYFLVGYDFPSYMEAQSRVDDAYKDAKKWIKMSILSTAGSGKFSSDRTISQYANDIWNIKECRVP*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCGTCACTCCAAGAAGTTGAAGGAGATGAGCTCCGAGGAACGCAAGAATGTGGTGCCACGAACTGTCATGCTTGGTGGAAAAGCATTTGCAACATATACCCAAGCTAAGAGGATTGTGAAACTTGTGAATGATGTAGGGGCTGTCGTGAATAATGACCCAGATATTGGTGATCTTTTGAAGGTAGTCTTCATTCCAAACTACAATGTGTCAGTTGCAGAGATTCTTATTCCAGGAAGTGAGCTATCTCAGCATATTAGCACAGCTGGAATGGAGGCAAGTGGAACTAGCAATATGAAGTTTGCATTAAATGGGTGTCTCATTATTGGTACACTAGATGGTGCCAATGTAGAAATCAGAGAAGAGATAGGGGAAGATAACTTTTTCTTGTTTGGTGCCCAAGCACATGATGTACCAAAAACTACGGAGAGAGAGAGAGCAGGGACTGTTTGTCCCAGACCCTCGTTTTGAAGAAGCAAAGCAGTTTGTAGAAAAGCCGTxxxATTTGGTGATTATGATTACACTCCACTACTTGACTCCCTTGAAGGCAATACTGGTTATGGTCGTGGTGATTATTTCCTTGTGGGATATGACTTCCCAAGCTACATGGAAGCACAATCTAGAGTTGATGATGCATACAAGGATGCCAAAAAGTGGATAAAAATGTCAATCCTAAGTACTGCTGGCAGTGGTAAATTTAGCAGTGATAGAACCATCTCTCAATATGCCAATGACATTTGGAATATAAAGGAATGCAGAGTTCCTTAGTGAGTGCATGAAGAAATTCCACTTCGTCCAAAATGGCTCAACTGCTTCGGATACTACCAAAAATAATGAAACGAATTCTTCCATTAAAAGGGTGTTCAAGATGATTGTCATTTTATAAGGATAAGCTTATAAAATATGTATCTGGGAAGAGGATGCGGCATGTCCTTTTGAAGAATATGCTTATTTTAATCTTTTCAAGGATCTCCGTATTGGGTGGCTTTATTATTATAGTCCACTGTCACAGGAAAATTTGGCTTTAGAGTTTGCAAGTAATCACTCTTTATAATCTGTTCTCTATATGTATGCTTCTAGAGAGGTTAATGAATAGAAGGTTGAATAATAACAGGGAATTTATGTGTACGCAAACTAGTGCAAATGACAAGTAGATTATTTGAAAACCATTCCCAGTCTGTTAACCCTGTAATAATTATGCTTCTATGGAATATGTCAATGAAAGT

Fln Alignment:

Contig3645___KKLKEMSSEERK-NVVPRTVMLGGKAFATYTQAKRIVKLVNDVGAVVNNDPDIGDLLKVVFIPNYNVSVAEILIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEDNFFLFGAQAHDVPKTTERERAGTVCPRPSF*RSKAVCRKAVxFGDYDYTPLLDSLEGNTGYGRGDYFLVGYDFPSYMEAQSRVDDAYKDAKKWIKMSILSTAGSGKFSSDRTISQYANDIWNIKECRVP
A9NUV6_______________KKMKEMTPEERRAKFVPRVCIFGGKAFATYVQAKRIVKLITDVGVTINHDTEIGDLLKIVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERAEGKFKPDPRFEEAKDYIKSGVxFGKYDYRPLIDSLEGNEGYGRGDYFLVGKDFPAYVECQERVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWGVKQVKLP

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
515		33		66	0.997452
516			33	66	0.997452
518		33	66		0.997452
524		33		66	0.997452
526	66			33	0.997452
527			33	66	0.997452
529	66	33			0.997452
531			33	66	0.997452
532	66			33	0.997452
694		20	80		0.995493
695		80	20		0.995493
698	20		80		0.995493
700	80	20			0.995493
701			80	20	0.995493
706	80	20			0.995493
707	80			20	0.995493
708	80		20		0.995493
710		20		80	0.995493
711	20			80	0.995493
712	57	42			1.0
713			85	14	0.993533
714		71		28	1.0
715	71	28			1.0
723	71			28	1.0
726	71		28		1.0
728		71		28	1.0
729	71		28		1.0
732	28			71	1.0
739	85			14	0.993533
790	87		12		0.992554
792		12	87		0.992554
793	71		14		0.984337
794	85			14	0.993533
797	85	14			0.993533
798	85	14			0.993533
802		85	14		0.993533
803	85		14		0.993533
808	11		88		0.923564
809		11		88	0.923564
810		88		11	0.923564
811		77		22	0.999999
812	22		22		0.999999
814	77	22			0.999999
815	77	22			0.999999
816	77			22	0.999999
822		77		22	0.999999
823	77	22			0.999999
827	11		88		0.923564
852	88	11			0.923564
853	88		11		0.923564
854	88			11	0.923564
858	81		18		0.999994
865		81	18		0.999994
894		18		81	0.999994
895			14	85	0.999981
897		14		85	0.999981
898	85		14		0.999981
900	85		14		0.999981
903		14	85		0.999981
904	85	14			0.999981
906	85			14	0.999981
907	85		14		0.999981
912	85	14			0.999981
913	14			85	0.999981
914	85	14			0.999981
915	85			14	0.999981
916	85	14			0.999981
1119	66	33			1.0
1240	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
438	450	GA GA GA GA GA GA G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain