SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3633

Length: 501 nt

UniGene Fasta

>uagpf_v2_unigene3633
CGTCGTGACCTTGGCTGTCACTCAATTTTCAAGCTCTATCTTCAAATGCACTGGCATGCCAGGGATTCTATCTCCGCCATTCACAATGGGAATGATTTTATGATCGGCTGTGCGCTGCGAGAACTACTGTAACAAAGGGGCTCTGTTTTACACACCACAGGATTTGTAGATCTTTTCTTTATAATCAGGTCTGCGAAATCACAGAAGGGTGGATTTGTGAAGGTCGTCGAGAGAAATGGCTTGGAGACGTCTCCTCACCCAGGTTGGATCTGTTATAAGACATTCAGGACAATCGTCATCTCTTCCTTTGTTGGGAAATAGGCTTCAACTATCTTTAAGTATGCTCGAGGGTGATGTAGGAATTGGGCTGAAGTTTCAAAGTCATCCAAAAAGACTCATGTCAAGTTACGTTGGAAGTTTGGCTCGTAGAGCTAGAGATATAGATGGGTCACATGAGGCTGCATTGCTAAAAGATCTATATAGAAGTGATGCAGAAGGAGT

Ace file of the UniGene uagpf_v2_unigene3633

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2969	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to ftsH-like protease n=1 Tax=Vitis vinifera RepID=UPI0001982E96	-	-	76%
FL-Next	sp=ATP-dependent zinc metalloprotease FTSH 5, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	40%
Blast2go	atp-dependent zinc metalloprotease ftsh mitochondrial-like	-	-	85%

Source	ECs	Term	Type	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	85%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	85%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	protein catabolic process	GO:0030163	Biological Process	85%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	85%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	85%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3		IPR001984	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8LQJ8

Fln msg: Distance to subject end: 631 aas, your sequence is shorter than subject: 88 - 715

Fln protein: MAWRRLLTQVGSVIRHSGQSSSLPLLGNRLQLSLSMLEGDVGIGLKFQSHPKRLMSSYVGSLARRARDIDGSHEAALLKDLYRSDAEG

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCAAGCTCTATCTTCAAATGCACTGGCATGCCAGGGATTCTATCTCCGCCATTCACAATGGGAATGATTTTATGATCGGCTGTGCGCTGCGAGAACTACTGTAACAAAGGGGCTCTGTTTTACACACCACAGGATTTGTAGATCTTTTCTTTATAATCAGGTCTGCGAAATCACAGAAGGGTGGATTTGTGAAGGTCGTCGAGAGAA_-_ATGGCTTGGAGACGTCTCCTCACCCAGGTTGGATCTGTTATAAGACATTCAGGACAATCGTCATCTCTTCCTTTGTTGGGAAATAGGCTTCAACTATCTTTAAGTATGCTCGAGGGTGATGTAGGAATTGGGCTGAAGTTTCAAAGTCATCCAAAAAGACTCATGTCAAGTTACGTTGGAAGTTTGGCTCGTAGAGCTAGAGATATAGATGGGTCACATGAGGCTGCATTGCTAAAAGATCTATATAGAAGTGATGCAGAAGGAGT

Fln Alignment:

Contig3633___MAWRRLLTQVGSVIRHSGQSSSLPLLGNRLQLSLS-MLEGDVGIGLKFQSHPKRLMSSYVGSLARRARDIDGSHEAALLKDLYRSDAE
Q8LQJ8_______________MAWRRVLSQVAR------NRSAYAICNEIIYANPSRILRGDTIAGGTLRNLHERYQSSYVGSFARRMRQMDSPSEASLLKEIYRSDPE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
228	33	66			0.997452
229		33	66		0.997452
230	75			25	0.996473
231			75	25	0.996473
232	75	25			0.996473
234	75	25			0.996473
466	75			25	0.996473
468		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain