SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3587

Length: 391 nt

UniGene Fasta

>uagpf_v2_unigene3587
TTGTATCCGAGGCATGGACTCATTTCTTCGTTTGGGCACTTCATCCTTCTTTGTGGTTATTTGGTGCAGCTTTCTTAGCTTCACTGCAATGGCAGGCATTTTCAATGTTTTTCTGAGCCTGGGTGTAGCTTGCACAATGGCATTTGTTTTTGGCTACACAGCTTCAGTTTTGACAACGGCTGTTATTGGAATGGTGGTTCTGTGGATAGATGGTAGCTTTTGGATGACTAGCTTACTGATTATAGCAGCAGGTCTTGCTTTTGCTCTGAATCATGAACATCTAGCACTGCTGATTACAATTATGTACTCTATCTATTCTGCTAAATTTCATGTGGGATGGCTTGGCATGGTTCTGAGCATGAACCTGGCTTTCATATCTAGTGACGTTCGC

Ace file of the UniGene uagpf_v2_unigene3587

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1005	5/7

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein DnaJ [Medicago truncatula]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	chaperone protein dnaj	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	62%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	62%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	62%
Blast2go	membrane	GO:0016020	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR85

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 130 - 770

Fln protein: CIRGMDSFLRLGTSSFFVVIWCSFLSFTAMAGIFNVFLSLGVACTMAFVFGYTASVLTTAVIGMVVLWIDGSFWMTSLLIIAAGLAFALNHEHLALLITIMYSIYSAKFHVGWLGMVLSMNLAFISSDVR

Protein Length: 131

Fln nts: TTGTATCCGAGGCATGGACTCATTTCTTCGTTTGGGCACTTCATCCTTCTTTGTGGTTATTTGGTGCAGCTTTCTTAGCTTCACTGCAATGGCAGGCATTTTCAATGTTTTTCTGAGCCTGGGTGTAGCTTGCACAATGGCATTTGTTTTTGGCTACACAGCTTCAGTTTTGACAACGGCTGTTATTGGAATGGTGGTTCTGTGGATAGATGGTAGCTTTTGGATGACTAGCTTACTGATTATAGCAGCAGGTCTTGCTTTTGCTCTGAATCATGAACATCTAGCACTGCTGATTACAATTATGTACTCTATCTATTCTGCTAAATTTCATGTGGGATGGCTTGGCATGGTTCTGAGCATGAACCTGGCTTTCATATCTAGTGACGTTCGC

Fln Alignment:

Contig3587___CIRGMDSFLRLGTSSFFVVIWCSFLSFTAMAGIFNVFLSLGVACTMAFVFGYTASVLTTAVIGMVVLWIDGSFWMTSXXXXXXXXXXXXNHEHLALLITIMYSIYSAKFHVGWLGMVLSMNLAFISSDV
B8LR85_______________CLRGMDSFLRLGTSSFFVVIWCSFLSFIAMAGIFNVLLSLGVACVMAFFFGYTASVLTTAVFGMVVLWMHGSFWMTSLLIIAAGIAFALNHEHLALLITIMYSIYSAKFHVGWLGMVLCMNLAFVSSDI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
111		33		66	0.997452
112			33	66	0.997452
123			66	33	0.997452
127		33	66		0.997452
133		33		66	0.997452
134	33		66		0.997452
136	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain