SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3566

Length: 2597 nt

UniGene Fasta

>uagpf_v2_unigene3566
ATTTTCTTAAATTCGCTGAAATGTAGTTACGTGCTCCTCAAATACAGAGGTCCACACCGCCCTTTGGGTTTCTCGATTGCTCGATAAAGGACCCGCGAAATCTCAGAGGTTCTGTTACATGTTACATAATGAAATTGCACATTTGACTTTTCATTTTTACACTAGTTACTAGTTCGTCACCTGTGCAACAATGGCGCACAAGGGAGAATCTTCAGAACCGAAAGGAGTCAAAAGGGATTTCAGCACTGCTATTTTGGAGCGGAAGAAGGCTCCCAATCGCCTTGTTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAATTACAGCTCTTCCGCGGAGATACAATTCTTATCAAGGGCAAGAAGAGAAAGGATACGATTTGTATCGCTCTCGCTGATGAGACGTGCGAAGAGCCCAGGATTAGAATGAACAAGGTTGTGCGTTCGAATCTGAGGGTTCGACTGGGCGATGTTGTTTCGGTTCATCAGTGCCCCGATGTAAAGTACGGCAAGCGTGTGCATATCCTGCCTATTGATGATACCATCGAGGGCGTTACTGGCAATCTGTTCGATGCATATTTAAAGCCCTATTTCATGGAGGCCTATCGCCCAGTAAGGAAAGGAGACCTTTTCCTTGTTAGGGGTGGAATGCGCAGTGTAGAGTTCAAAGTAATAGAGACGGACCCTGGGGAATATTGTGTTGTTTCTCCTGATACTGAGATCTTTTGTGAGGGAGAGACCTGTGAAGTCGGGAGGATGAAGATAGATTGGATGAAGTTGGTTATGACGATGTTGGCGGTGTAAGGAGGCAAATGGCCCAGATTCGTGAATTGGTTGAGCTTCCACTGAGGCACCCACAGCTCTTTAAATCAATTGGTGTTAAACCACCAAAGGGAATTTTGCTCTTTGGACCACCTGGTTCAGGGAAAACCTTAATTGCTAGGGCAGTAGCCAATGAAACTGGTGCTTTCTTTTTCTTAATTAATGGGCCCGAAATTATGTCGAAGTTGGCTGGAGAAAGTGAAAGCAATCTGAGGAAAGCCTTCGAGGAGGCAGAGAAGAATGCCCCATCCATTATTTTTATTGATGAAATTGATTCAATAGCACCCAAAAGAGAAAAGACACATGGTGAGGTTGAGAGGCGAATTGTTTCTCAACTTCTGACACTGATGGATGGGCTAAAATCTCGAGCCCATGTTATTGTGATAGGAGCAACTAACCGGCCAAATAGTATTGACCCAGCTCTTAGAAGGTTTGGAAGGTTTGACAGGGAAATTGATATTGGGGTTCCTGATGAAGTGGGGCGGCTGGAAGTCCTTCGTATACATACAAAGAATATGAAGCTTTCGGACGATGTTGATCTTGAACGAATTGCGAAGGACACACATGGATATGTTGGAGCTGATCTTGCAGCTCTTTGCACCGAGGCTGCGCTACAGTGCATCAGGGAAAAAATGGATGTTATAGACTTGGAAGATGAGACCATCGATGCTGAAATCCTCAATTCTATGGCTGTTACAAATGAGCACTTCCAGACTGCGTTGGGCACCAGTAACCCATCTGCCTTACGTGAAACTGTTGTTGAAGTGCCTAATGTTTCTTGGGATGATATTGGTGGTTTGGAAAATGTCAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAATTTGAAAAGTTTGGCATGTCCCCTTCGAAAGGAGTGCTCTTTTACGGGCCACCAGGTTGTGGTAAGACGCTGCTTGCAAAAGCTATTGCGAATGAGTGCCAGGCCAATTTTATCAGTGTAAAAGGCCCAGAATTATTAACTATGTGGTTTGGAGAAAGTGAGGCTAATGTTCGAGAGATTTTTGACAAAGCTCGACAGTCAGCGCCTTGCGTCTTGTTTTTTGATGAGCTTGATTCTATTGCTACACAGCGAGGGAGCAGTGTTGGCGATGCAGGTGGTGCTGCAGACAGAGTCCTAAATCAGTTGTTAACAGAGATGGATGGGATGACAGCCAAGAAAACTGTTTTCATTATTGGGGCCACAAATAGGCCAGATATCATTGATCCTGCATTGCTAAGGCCTGGTAGGCTTGACCAGTTAATTTACATACCATTACCCGATGAGAGTTCACGCCTGCAAATTTTTAAAGCATGCTTGAGAAAGTCACCGGTTGCCAAGGATGTTGATTTGACTGCTTTAGCTCGTTATACCCAAGGATTCAGTGGAGCTGATATTACAGAAATTTGTCAGCGGGCTTGCAAATATGCCATTCGAGAAAACATCGAGCAGGATATTGAACGTGAAAGGAAGAGAAAAGAAAATCCTGAAGCTATGGATGAGGATGATAGTGAGGAGGTGTCTGAAATAAAAGCAGCTCATTTTGAGGAGAGCATGAAATATGCTCGAAGGAGTGTCAGCGATGCTGATATCCGAAAATATCAAGCATTTGCACAGACGCTGCAGCAGTCTCGAGGTTTTGGTACAGAATTCCGATTTGCAGACAGGCCAGATACAGCGGCAGCTAGGTTCTTCAGAACCATTTAATGGAACAGAAAATAAAGAAGACG

Ace file of the UniGene uagpf_v2_unigene3566

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7864	64/170
SustainPine v2.0	sp_v2.0_unigene19529	39/170
SustainPine v2.0	sp_v2.0_unigene31473	55/170
SustainPine v2.0	sp_v2.0_unigene77453	3/170

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG0464 ATPases of the AAA+ class	-	-	65%
FL-Next	sp=Cell division cycle protein 48 homolog; Glycine max (Soybean) (Glycine hispida).	-	-	90%
Blast2go	cell division cycle protein 48 homolog	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	96%
Blast2go	cell division	GO:0051301	Biological Process	96%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	plasma membrane	GO:0005886	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	CDC48, domain 2	IPR004201	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P54774

Fln msg: Separated hits, possible frame ERROR between 766 and 805,

Fln protein: MAHKGESSEPKGVKRDFSTAILERKKAPNRLVVDEAINDDNSVVCLHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVSPDTEIFCEGxxxxxxxxxxxxxxVGYDDVGGVRRQMAQIRELVELPLRHPQLFKSIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKYAIRENIEQDIERERKRKENPEAMDEDDSEEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADRPDTAAARFFRTI*

Protein Length: 796

Fln nts: ATTTTCTTAAATTCGCTGAAATGTAGTTACGTGCTCCTCAAATACAGAGGTCCACACCGCCCTTTGGGTTTCTCGATTGCTCGATAAAGGACCCGCGAAATCTCAGAGGTTCTGTTACATGTTACATAATGAAATTGCACATTTGACTTTTCATTTTTACACTAGTTACTAGTTCGTCACCTGTGCAACA_-_ATGGCGCACAAGGGAGAATCTTCAGAACCGAAAGGAGTCAAAAGGGATTTCAGCACTGCTATTTTGGAGCGGAAGAAGGCTCCCAATCGCCTTGTTGTCGATGAGGCTATCAACGACGATAACTCTGTGGTCTGTCTGCATCCGGACACCATGGAAAAATTACAGCTCTTCCGCGGAGATACAATTCTTATCAAGGGCAAGAAGAGAAAGGATACGATTTGTATCGCTCTCGCTGATGAGACGTGCGAAGAGCCCAGGATTAGAATGAACAAGGTTGTGCGTTCGAATCTGAGGGTTCGACTGGGCGATGTTGTTTCGGTTCATCAGTGCCCCGATGTAAAGTACGGCAAGCGTGTGCATATCCTGCCTATTGATGATACCATCGAGGGCGTTACTGGCAATCTGTTCGATGCATATTTAAAGCCCTATTTCATGGAGGCCTATCGCCCAGTAAGGAAAGGAGACCTTTTCCTTGTTAGGGGTGGAATGCGCAGTGTAGAGTTCAAAGTAATAGAGACGGACCCTGGGGAATATTGTGTTGTTTCTCCTGATACTGAGATCTTTTGTGAGGGAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTTGGTTATGACGATGTTGGCGGTGTAAGGAGGCAAATGGCCCAGATTCGTGAATTGGTTGAGCTTCCACTGAGGCACCCACAGCTCTTTAAATCAATTGGTGTTAAACCACCAAAGGGAATTTTGCTCTTTGGACCACCTGGTTCAGGGAAAACCTTAATTGCTAGGGCAGTAGCCAATGAAACTGGTGCTTTCTTTTTCTTAATTAATGGGCCCGAAATTATGTCGAAGTTGGCTGGAGAAAGTGAAAGCAATCTGAGGAAAGCCTTCGAGGAGGCAGAGAAGAATGCCCCATCCATTATTTTTATTGATGAAATTGATTCAATAGCACCCAAAAGAGAAAAGACACATGGTGAGGTTGAGAGGCGAATTGTTTCTCAACTTCTGACACTGATGGATGGGCTAAAATCTCGAGCCCATGTTATTGTGATAGGAGCAACTAACCGGCCAAATAGTATTGACCCAGCTCTTAGAAGGTTTGGAAGGTTTGACAGGGAAATTGATATTGGGGTTCCTGATGAAGTGGGGCGGCTGGAAGTCCTTCGTATACATACAAAGAATATGAAGCTTTCGGACGATGTTGATCTTGAACGAATTGCGAAGGACACACATGGATATGTTGGAGCTGATCTTGCAGCTCTTTGCACCGAGGCTGCGCTACAGTGCATCAGGGAAAAAATGGATGTTATAGACTTGGAAGATGAGACCATCGATGCTGAAATCCTCAATTCTATGGCTGTTACAAATGAGCACTTCCAGACTGCGTTGGGCACCAGTAACCCATCTGCCTTACGTGAAACTGTTGTTGAAGTGCCTAATGTTTCTTGGGATGATATTGGTGGTTTGGAAAATGTCAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAGAAATTTGAAAAGTTTGGCATGTCCCCTTCGAAAGGAGTGCTCTTTTACGGGCCACCAGGTTGTGGTAAGACGCTGCTTGCAAAAGCTATTGCGAATGAGTGCCAGGCCAATTTTATCAGTGTAAAAGGCCCAGAATTATTAACTATGTGGTTTGGAGAAAGTGAGGCTAATGTTCGAGAGATTTTTGACAAAGCTCGACAGTCAGCGCCTTGCGTCTTGTTTTTTGATGAGCTTGATTCTATTGCTACACAGCGAGGGAGCAGTGTTGGCGATGCAGGTGGTGCTGCAGACAGAGTCCTAAATCAGTTGTTAACAGAGATGGATGGGATGACAGCCAAGAAAACTGTTTTCATTATTGGGGCCACAAATAGGCCAGATATCATTGATCCTGCATTGCTAAGGCCTGGTAGGCTTGACCAGTTAATTTACATACCATTACCCGATGAGAGTTCACGCCTGCAAATTTTTAAAGCATGCTTGAGAAAGTCACCGGTTGCCAAGGATGTTGATTTGACTGCTTTAGCTCGTTATACCCAAGGATTCAGTGGAGCTGATATTACAGAAATTTGTCAGCGGGCTTGCAAATATGCCATTCGAGAAAACATCGAGCAGGATATTGAACGTGAAAGGAAGAGAAAAGAAAATCCTGAAGCTATGGATGAGGATGATAGTGAGGAGGTGTCTGAAATAAAAGCAGCTCATTTTGAGGAGAGCATGAAATATGCTCGAAGGAGTGTCAGCGATGCTGATATCCGAAAATATCAAGCATTTGCACAGACGCTGCAGCAGTCTCGAGGTTTTGGTACAGAATTCCGATTTGCAGACAGGCCAGATACAGCGGCAGCTAGGTTCTTCAGAACCATTTAA___TGGAACAGAAAATAAAGAAGACG

Fln Alignment:

Contig3566___MAHKGESSEPKGVKRDFSTAILERKKAPNRLVVDEAINDDNSVVCLHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVSPDTEIFCEGExxxxxxxxxxxxxVGYDDVGGVRRQMAQIRELVELPLRHPQLFKSIGVKPPKGILLFGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQXXXXXXXXXXXXXXXLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVAKDVDLTALARYTQGFSGADITEICQRACKYAIRENIEQDIERERKRKENPEAMDEDD-SEEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADRPD
P54774_______________MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGExxxxxxxxxxxxxVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESGD

SNPs (tot: 200)

Position	A %	C %	G %	T %	Probability
45		50		50	1.0
165	80			20	0.999996
234	88		11		0.923564
235	88		11		0.923564
236	88	11			0.923564
237	88			11	0.923564
239			88	11	0.923564
240		11	88		0.923564
243	11			88	0.923564
284	11	88			0.923564
324	77		22		0.999999
371	84			15	0.999986
497		19	76		1.0
521	9		90		0.999872
543	87			12	0.999964
544	87			12	0.999964
545			87	12	0.999964
548		12		87	0.999964
598	15		7	69	0.999985
599			69	30	1.0
600		7	15	69	0.999985
602		61		38	1.0
651	85	14			0.999981
652	84		15		0.999986
653	84			15	0.999986
654		16	83		0.999991
656	81			18	0.999994
663			18	81	0.999994
664			18	81	0.999994
666		81	18		0.999994
668	18			81	0.999994
669		18	81		0.999994
671	20			80	0.999996
674	20		80		0.999996
692	90	10			0.90298
699	77		22		0.999999
700	77			22	0.999999
701	77	22			0.999999
704	77		22		0.999999
706		22		77	0.999999
707	77	22			0.999999
708			77	22	0.999999
709	77			22	0.999999
711	77		22		0.999999
714		22	77		0.999999
717		88		11	0.923564
718	11	88			0.923564
720	11		88		0.923564
976		12	87		0.992554
978		87		12	0.992554
979	87	12			0.992554
984	12	87			0.992554
986	87	12			0.992554
987	87			12	0.992554
990	87		12		0.992554
991	87	12			0.992554
992	87			12	0.992554
993		87	12		0.992554
995		12	87		0.992554
996	12		87		0.992554
997		12		87	0.992554
998			87	12	0.992554
1000	16			83	0.994512
1015		50		50	1.0
1079		50		50	1.0
1210		17	82		1.0
1211	11		88		0.999952
1212		11	70	17	1.0
1214			17	82	1.0
1215	70			29	1.0
1216	70		29		1.0
1217	88		11		0.999952
1218	70	29			1.0
1219		17	47	35	1.0
1220		70	11	17	1.0
1222		82	17		1.0
1224	82	17			1.0
1225		11	70	17	1.0
1226		70	17	11	1.0
1227		82		17	1.0
1228	11	88			0.999952
1230		17		82	1.0
1231			82	17	1.0
1232		17		82	1.0
1233	17			82	1.0
1309	81			18	1.0
1311		18		81	1.0
1313	80	20			1.0
1410	66		25	8	1.0
1489	87			12	0.992554
1491		12	87		0.992554
1493	87	12			0.992554
1602	20		80		0.995493
1628	50		25	25	1.0
1629	50		25	25	1.0
1630		25		75	1.0
1631		25	75		1.0
1632	25			75	1.0
1633		25	25	50	1.0
1634	25			75	1.0
1636		25		75	1.0
1638			89	10	0.999919
1641	84	10	5		0.999846
1644	89			10	0.999919
1645		15		84	1.0
1657		11	88		0.999937
1659	88	11			0.999937
1738		50		37	1.0
1744		26	73		1.0
1786			73	26	1.0
1807	21		78		1.0
1816	14	85			0.999981
1829	90	10			0.90298
1830			11	88	0.923564
1888	16			83	0.994512
1889	16	83			0.994512
1895	85	14			0.993533
1896			16	83	0.994512
1898		16		83	0.994512
1899			16	83	0.994512
1900		16		83	0.994512
1904	83	16			0.994512
1905	83			16	0.994512
1906	83			16	0.994512
1908		83	16		0.994512
1909		33		66	1.0
1910		83		16	0.994512
1912	83			16	0.994512
1915		14	85		0.993533
1918	14		14		0.984337
1919	85			14	0.993533
1922	14		85		0.993533
1936	14			85	0.993533
1937		14		85	0.993533
1939		14		85	0.993533
1940	14			85	0.993533
2003	71		28		1.0
2105		25		75	0.996473
2108	80		20		0.995493
2110			20	80	0.995493
2111	20		80		0.995493
2113		20		80	0.995493
2114	80			20	0.995493
2115	80			20	0.995493
2122			80	20	0.995493
2123		20		80	0.995493
2125		20	80		0.995493
2126			80	20	0.995493
2132		80		20	0.995493
2156	10	90			0.90298
2158	90			10	0.90298
2159		10		90	0.90298
2161	90			10	0.90298
2164		10	90		0.90298
2167		90	10		0.90298
2168	90		10		0.90298
2171		88		11	0.923564
2174	12		87		0.992554
2176	85			14	0.993533
2177	85	14			0.993533
2193		50		50	1.0
2197		14	85		0.993533
2198	85		14		0.993533
2199	85			14	0.993533
2200	85	14			0.993533
2203		85	14		0.993533
2210		14		85	0.993533
2213		85		14	0.993533
2215	87		12		0.992554
2216	75	12		12	0.975346
2217		12	87		0.992554
2218	12		87		0.992554
2220		12		87	0.992554
2221		12	87		0.992554
2225	87	12			0.992554
2227			12	87	0.992554
2229		12	87		0.992554
2263		4	85		0.999726
2266		14	85		1.0
2269			90	9	0.999872
2270	90		9		0.999872
2271		4	9	85	0.999726
2272	85	14			1.0
2274			9	90	0.999872
2275	85		4	9	0.999726
2278		9	90		0.999872
2279	85	4		9	0.999726
2280	90	9			0.999872
2332	59		40		1.0
2383		35	65		1.0
2397	40		60		1.0
2428	61			38	1.0
2429		38	61		1.0
2436	61		38		1.0
2451		38		61	1.0
2472	42	57			1.0
2523	57		42		1.0
2541		57	42		1.0
2549	42		57		1.0
2555		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain