SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3540

Length: 394 nt

UniGene Fasta

>uagpf_v2_unigene3540
CGTCGTGACCTTGGCTGTCACTCAGATGTAACTCCAGAAGCAACAAAACCTTTGCTAGACAAAGAGGCACCAGGCCTTGTTCAAGTCATGTTACAAGAGAGCCTTAAGGTGACGAGAACAGCAATGCTTTCTCGTGCTGTTGCTGGTATTCGTGGCTCAACCTTGATAATCAACATGCCAGGTAACCCAAATGCCGTAGCTGAGTGTTTGGAAGCTTTGATGCCAGCACTTCCGCATGCATTAAGACAGTTAAGAGGAGACAAGAAAGAAAAGCATCCCCGTCATGTACCGCATCAAGATTCCAAACCCGCAGATGTCTGGGAAGCGAGTTACATGATGGCTTCCAAGGAATCAAGAGATTGTTCTTGTACACACTAGGTTGTGTTTTCTTCAA

Ace file of the UniGene uagpf_v2_unigene3540

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene605	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Molybdopterin biosynthesis protein, putative n=1 Tax=Ricinus communis RepID=B9RQ35_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	molybdopterin biosynthesis protein cnx1-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	76%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	76%
Blast2go	molybdenum ion binding	GO:0030151	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Molybdenum cofactor biosynthesis, conserved site	IPR008284	-	-
Sma3	MoeA, C-terminal, domain IV	IPR005111	-	-
Sma3	MoeA, N-terminal and linker domain	IPR005110	-	-
Sma3	Molybdopterin binding	IPR001453	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ00

Fln msg: your sequence is shorter than subject: 126 - 677

Fln protein: RRDLGCHSDVTPEATKPLLDKEAPGLVQVMLQESLKVTRTAMLSRAVAGIRGSTLIINMPGNPNAVAECLEALMPALPHALRQLRGDKKEKHPRHVPHQDSKPADVWEASYMMASKESRDCSCTH*

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGTAACTCCAGAAGCAACAAAACCTTTGCTAGACAAAGAGGCACCAGGCCTTGTTCAAGTCATGTTACAAGAGAGCCTTAAGGTGACGAGAACAGCAATGCTTTCTCGTGCTGTTGCTGGTATTCGTGGCTCAACCTTGATAATCAACATGCCAGGTAACCCAAATGCCGTAGCTGAGTGTTTGGAAGCTTTGATGCCAGCACTTCCGCATGCATTAAGACAGTTAAGAGGAGACAAGAAAGAAAAGCATCCCCGTCATGTACCGCATCAAGATTCCAAACCCGCAGATGTCTGGGAAGCGAGTTACATGATGGCTTCCAAGGAATCAAGAGATTGTTCTTGTACACACTAG___GTTGTGTTTTCTTCAA

Fln Alignment:

Contig3540___DVTPEATKPLLDKEAPGLVQVMLQESLKVTRTAMLSRAVAGIRGSTLIINMPGNPNAVAECLEALMPALPHALRQLRGDKKEKHPRHVPHQDSKPADVWEASYMMASKESRDCSCTH
B8LQ00_______________DVNPEATKPLLDKEAPGLVQFMLQESLKVTKTAVLSRAAAGIRGSTLIINMPGNPNAVAECLEALMPALPHALRQLRGDKKEKHPRHVPHGDSKPADVWEASYMMASKESRDCSCTH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain