SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3527

Length: 335 nt

UniGene Fasta

>uagpf_v2_unigene3527
CGTCGTGACCTTGGCTGTCACTCATTATTGGCTCCAACAATGCTGAAATTGAATTTCTGAAAAGGGGCCCTTTCAGTGTAAAGGAATTTGATGCTCTTATCAGTGCGTTAAGAATAGCTTCTGGAAACACAAATGAAAGGAGAGCTGTACAGAAGAAACACAGAGATGCTCCAAAGCAAAGGGACAGGCAGAACACTGGACCTAATGTTTCTTCTAATGGAAATGCTTTAGAAGCATTAGAAGGCATGGGAGTGAAAATATATGGTCTAGAGGCAACTTATGGAAGCTCTGATAAGGATGTGGTATCTTGGGACAATATAGCAGGATACTATGAG

Ace file of the UniGene uagpf_v2_unigene3527

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene778	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] gb\|AEE82370.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	37%
Blast2go	aaa-type atpase family protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TR79

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 273 aas, your sequence is shorter than subject: 111 - 596

Fln protein: S*PWLSLIIGSNNAEIEFLKRGPFSVKEFDALISALRIASGNTNERRAVQKKHRDAPKQRDRQNTGPNVSSNGNALEALEGMGVKIYGLEATYGSSDKDVVSWDNIAGYYE

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTGGCTCCAACAATGCTGAAATTGAATTTCTGAAAAGGGGCCCTTTCAGTGTAAAGGAATTTGATGCTCTTATCAGTGCGTTAAGAATAGCTTCTGGAAACACAAATGAAAGGAGAGCTGTACAGAAGAAACACAGAGATGCTCCAAAGCAAAGGGACAGGCAGAACACTGGACCTAATGTTTCTTCTAATGGAAATGCTTTAGAAGCATTAGAAGGCATGGGAGTGAAAATATATGGTCTAGAGGCAACTTATGGAAGCTCTGATAAGGATGTGGTATCTTGGGACAATATAGCAGGATACTATGAG

Fln Alignment:

Contig3527___IIGSNNAEIEFLKRGPFSVKEFDALISALRIASGNTNERRAVQKKHR-DAPKQRDRQNTGPNVSSNGNALEALEGMGVKIYGLEATYGSSDKDVVSWDNIAGY
D7TR79_______________LISADKAEIEFIKQGSFSSEELDALVSVLQFAGGRVEQNKTLERRPRGDAPQMHSAQ----------KSIASLEAMGVRVFGADEPQGGLSKNEVLWDNIAGY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain