SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3524

Length: 1266 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3524

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2032	57/59

Source	Descriptions	Term	Type	Identity
AutoFact	asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp\|Q9SW96.1\|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb\|AAD4	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	asparaginyl-trna cytoplasmic 1-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Asparagine--tRNA ligase.	EC:6.1.1.22	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	84%
Blast2go	Aspartate--tRNA ligase.	EC:6.1.1.12	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	asparaginyl-tRNA aminoacylation	GO:0006421	Biological Process	84%
Blast2go	aspartyl-tRNA aminoacylation	GO:0006422	Biological Process	84%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	84%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	84%
Blast2go	asparagine-tRNA ligase activity	GO:0004816	Molecular Function	84%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	aspartate-tRNA ligase activity	GO:0004815	Molecular Function	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	IPR002312	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Asparaginyl-tRNA synthetase, class IIb	IPR004522	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Protein of unknown function DUF821, CAP10-like	IPR008539	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg: your sequence is shorter than subject: 280 - 566

Fln protein: RRDLGCHSFSQDFFTRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLQDDMNCAEDYVKFLCQWLLDNCLDDMEFMAKMFDKTAIDRLRSVANTSFARITYTEAIQLLEKVTDKKFDNEVEWGIDLASEHERYLTEEIFKKPVIVYNYPKNIKAFYMRVNDDGKTVAAMDVLVPKVGELIGGSQREERYEVIVNRIQEMGLPREPYDWYLDLRRYGTVKHAGFGLGFERMVLFATGLENIRDAIPFPRYPGRADL*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCCCAGGACTTCTTTACCCGCCAAGCATTCTTGACTGTCTCTGGTCAGCTCCAGGTTGAGACCTATGCATGTGCACTTAGTAGTGTATACACATTTGGTCCAACTTTCCGTGCTGAAAATTCTCATACATCGAGGCATCTTGCGGAGTTTTGGATGGTTGAGCCTGAAATTGCCTTTGCAGATTTACAGGATGACATGAATTGTGCAGAAGACTATGTGAAGTTCTTGTGTCAATGGTTGCTTGATAACTGCCTTGATGATATGGAATTCATGGCAAAGATGTTTGATAAGACTGCTATAGATCGACTTCGTTCTGTGGCGAATACCTCATTTGCACGTATTACGTACACAGAAGCAATTCAACTTCTAGAGAAGGTTACAGATAAGAAATTTGACAATGAGGTGGAGTGGGGCATTGATTTAGCATCGGAGCATGAGAGATATTTAACAGAGGAGATATTTAAAAAGCCAGTAATTGTGTACAACTATCCAAAAAACATCAAGGCATTTTACATGCGGGTCAATGATGATGGAAAGACTGTTGCTGCTATGGATGTACTTGTGCCTAAGGTTGGGGAATTGATTGGTGGGAGTCAAAGAGAGGAGCGATATGAAGTCATTGTAAATAGGATACAAGAGATGGGCTTGCCAAGAGAGCCTTATGATTGGTACTTGGATCTGCGTCGATATGGAACTGTAAAGCATGCTGGATTTGGCCTAGGGTTTGAACGTATGGTACTTTTTGCGACTGGTCTGGAAAATATAAGAGATGCCATCCCCTTCCCTAGATATCCAGGGAGAGCTGATCTGTGA___ACGTTACAAGTTCAATTGCATTTTTGTTTCAACTTACATAAGATTGACTGACCAAAGATAATTCTAAGGTTGAATAGGAAAAGCTATATTTATAAACTTGAAACTGCCAGTGAGCTAAGCAGTATCAGATTTGGGTTTATTCCATATTGTGATAGGGTAATTCTTATATATTTGTAATTCTAAATGTGTCATTCTTTAACATATTATTTAATTGTTTTTCTTATATGGTTGCAAGTAGACTGATGCTCTGTAGAGGAATTTTACGGAAAATTCTACTGCTTAGGGGAATTAGTAAATACTAAATACTGTTCTGGATTCGTTATTCAGTACAATAACTACTTGATTGTATGAGACGACCTTGACTCTTAAGTTGCTTCAGTGGAGCTTACCTGCAACGTGTTTGGTGTCTTTAAATCAACTGTTCTA

Fln Alignment:

Contig3524___GCHSFSQDFFTRQAFLTVSGQLQVETYACA-LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLQDD-MNCAEDYVKFLCQWLLDNCLDDMEFMAKMFDKTAIDRLRSVANTSFARITYTEAIQLLEKVTDKKFDNEVEWGIDLASEHERYLTEEIFKKP----VIVYNYPKNIKAFY-MRVNDDGKTVAAMDVLVPKVGELIGGSQREERYEVIVNRIQEMGLPREPYDWYLDLRRYGTVKHAGFGLGFERMVLFATGLENIRDAIPFPRYPGR
A9NX07_______________GSSVFKLDYKGQPACLAQSPQLHKQMAICADFGRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYFEVLDILDKLFITIFDGLNEHCKKELHAINQQYPFEPLKYLRKTL-----RLTFQEGVQML-----KEAGIEVDPLGDFNTETERKLGGLVREKYDTDFYILHRYPLAVRPFYTMPCIDDPLYSNSFDVFI-RGEEIISGAQRVHEPEFLTKRAKELGIDVNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFPRDPQR

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
49		50		50	1.0
51	57		42		1.0
52	57			42	1.0
57		42		57	1.0
62	57		42		1.0
68	42			57	1.0
193		18		81	0.999994
195	72			27	1.0
196	72	27			1.0
197	81		18		0.999994
199			18	81	0.999994
200	18		72		0.999994
205			18	81	0.999994
208	80			20	0.999996
210	80			20	0.999996
211		20		80	0.999996
212	20			80	0.999996
213		20		80	0.999996
214	80			20	0.999996
350	88	11			0.923564
352		11		88	0.923564
353	88			11	0.923564
355	11	88			0.923564
421		14		85	0.993533
423	85			14	0.993533
426	85		14		0.993533
430		14	85		0.993533
431			85	14	0.993533
435	75	12		12	0.975346
438		12	75		0.975346
439	12		75	12	0.975346
440		12	87		0.992554
441	12		75	12	0.975346
443	87	12			0.992554
447	87	12			0.992554
449			12	87	0.992554
451	87	12			0.992554
452	12		87		0.992554
526		85		14	0.993533
527	71		28		1.0
530	85		14		0.993533
531	71	14		14	0.984337
532			85	14	0.993533
533	14	14	71		0.984337
534	14	85			0.993533
536		14		85	0.993533
539			14	85	0.993533
540	85		14		0.993533
545		85		14	0.993533
546		14	85		0.993533
547	12	12	75		0.975346
548		12	87		0.992554
552	87		12		0.992554
556		12		87	0.992554
557		12	87		0.992554
558	87			12	0.992554
563	87			12	0.992554
564	87	12			0.992554
566		12	87		0.992554
567	87			12	0.992554
578		50		50	1.0
599		20	80		0.999996
602		20		80	0.999996
604			80	20	0.999996
606	20		80		0.999996
607	80	20			0.999996
608	80	20			0.999996
612	80		20		0.999996
613		20		80	0.999996
616	11	11	77		0.968132
617	11	11		77	0.968132
618		20	70	10	0.999998
620	10	10	70	10	0.922578
621	90	10			0.90298
624		90	10		0.90298
626	90	10			0.90298
627	90	10			0.90298
628			90	10	0.90298
630	90		10		0.90298
632	90	10			0.90298
633			90	10	0.90298
636			90	10	0.90298
638	10		90		0.90298
639	90	10			0.90298
641	90	10			0.90298
642	10			90	0.90298
672		15	84		0.999986
674			84	15	0.999986
676			15	84	0.999986
681	83			16	0.999991
682	83			16	0.999991
684	83		16		0.999991
685		16	83		0.999991
686	83			16	0.999991
688		83		16	0.999991
690	16			83	0.999991
691		16		83	0.999991
692	83			16	0.999991
693		16		83	0.999991
694	16		83		0.999991
763	78	21			1.0
764			21	78	1.0
765			78	21	1.0
767	21			78	1.0
768	78	21			1.0
772			21	78	1.0
773		21		78	1.0
776		78		21	1.0
777		21	78		1.0
841	13		80		0.999961
857	13	86			0.999973
1094		21	78		1.0
1209	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain