SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3505

Length: 1107 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3505

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22604	7/15
SustainPine v2.0	sp_v2.0_unigene42182	4/15
SustainPine v2.0	sp_v2.0_unigene76955	3/15

Source	Descriptions	Term	Type	Identity
AutoFact	glycolipid transfer protein-like protein [Arabidopsis thaliana] gb\|AAC16265.1\| unknown protein [Arabidopsis thaliana] gb\|AAS76271.1\| At2g34690 [Arabidopsis thaliana] gb\|AEC09010.1\| glycolipid transfer protein-like protein [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell death	GO:0008219	Biological Process	76%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	76%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	76%
Blast2go	sphingosine transmembrane transporter activity	GO:0010175	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycolipid transfer protein domain	IPR014830	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB1

Fln msg:

Fln protein: MAANTQTNMPLRQIAVAFEELALALKSGNGDIQLVPFCRACSRVSVLFGCLGIAFKFAEKDFVDKIHSLTEASSSSATLQALVELDIKSGSMSGGSYSQNLLLVKRGLDMVKVLFEKLLVTGGNSLRDPASVAYARVLAPHHGWAIRKAVAAGMYTLPTKAQLLKKLNEDEASARVDMQRYINASASIIQYVNNLFLSRNLGI*

Protein Length: 205

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCACACGCGTTACCTGGCTGTCACTCACCTTTTTAAGATAGATATAATATTGCATAAGAAGTTACATTTTGCCAGCGCAAGCCCAAGTAGAGAACC_-_ATGGCGGCAAACACCCAGACGAACATGCCCCTGAGGCAGATTGCAGTAGCATTTGAGGAATTGGCTTTGGCTCTTAAGTCGGGCAACGGTGATATTCAACTGGTCCCTTTTTGTCGTGCTTGTTCCCGGGTCTCAGTGCTTTTTGGGTGTCTGGGTATCGCCTTCAAATTTGCAGAAAAAGACTTTGTTGACAAGATCCACTCTTTGACAGAAGCATCGAGTTCTTCTGCAACTTTGCAAGCATTAGTGGAATTGGACATCAAATCTGGTTCCATGAGTGGTGGTAGCTATTCCCAGAACTTGCTTTTAGTCAAGCGAGGGCTGGACATGGTCAAAGTGTTATTTGAAAAACTTCTTGTTACAGGGGGGAACTCTTTGAGAGATCCGGCTTCAGTGGCATATGCACGAGTTTTAGCTCCACACCATGGTTGGGCTATTAGAAAGGCTGTTGCTGCTGGAATGTATACACTACCAACAAAAGCACAGCTTTTAAAGAAGCTAAACGAAGATGAGGCATCTGCTAGAGTGGACATGCAAAGATATATAAATGCGTCAGCCTCTATTATACAATATGTTAACAACCTATTCCTTTCAAGGAATTTAGGTATATAG___TGGTGAGTTCTTCCTCGTCTGGACTTGGCGGAAATTTTATACGTTGGTGATTATGTATCCTCTCTAACATGACTGCGAAAGTCTTGTACCAGTAACCATTGCAAGCCCTTGATCTTGCTTTTGGATTTGTACTGGGGAACTAGTGTGTATTGAGATTACTTATGCCATCTTAACTTGACTTATTGTTTAGTAATCAGCAAAGTAAACATGGTATTCTTTTTATAAGCTAAATTATGTTGAATGTCTCATATATCTTTCGAATTTTAATATTTATTTAGATAAAGAATATAGCTGCAACACTATTTTTGTTAGTTTGAATTCAATATTTGCTGCTTCAAAATATTTTACATGACAAATAAACTGGTTGATTAT

Fln Alignment:

Contig3505___MAANTQTNMPLRQIAVAFEELALALKSGNGDIQLVPFCRACSRVSVLFGCLGIAFKFAEKDFVDKIHXXXXXXXXXXXXXXXVELDIKSGSMSGGSYSQNLLLVKRGLDMVKVLFEKLLVTGGNSLRDPASVAYARVLAPHHGWAIRKAVAAGMYTLPTKAQLLKKLNEDEASARVDMQRYINASASIIQYVNNLFLSRNLGI
D5ACB1_______________MAANTKTNRPLRQIAEAFEELALALKSGSGDIQLAPFCRACSRVSVLFGYLGIAFKFAEKDFVDKIQSLTEASSSSATLQALVDSDIKSGSVRGGSYSNNLLLVKRGLDMVKVLFERLLVTRGSSLRDPASVAYAQVLAPHHGWAIRKVVAAGMYTLPTKSQLLKKLNEDEASARVDMQKYINASASILQYVNNLFLSRNLDI

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
195			33	66	0.997452
197		33		66	0.997452
201	33	66			0.997452
202		33		66	0.997452
209			33	66	0.997452
211			66	33	0.997452
213			66	33	0.997452
216	66	33			0.997452
217		66		33	0.997452
218		33	66		0.997452
219	33		66		0.997452
336			25	75	0.996473
341	75	25			0.996473
342			75	25	0.996473
343	75			25	0.996473
344	75		25		0.996473
348	75		25		0.996473
353		25	75		0.996473
561	75		25		0.996473
563		25	75		0.996473
568	25		75		0.996473
569		25	75		0.996473
572	75		25		0.996473
573			25	75	0.996473
574		25		75	0.996473
575	75			25	0.996473
577	75			25	0.996473
578	75	25			0.996473
580		25	75		0.996473
581			75	25	0.996473
583	25			75	0.996473
616	77	22			0.999999
619	77			22	0.999999
620		77	22		0.999999
622		22	77		0.999999
627			22	77	0.999999
628		22		77	0.999999
629	77			22	0.999999
630	77		22		0.999999
631	77			22	0.999999
632		22	77		0.999999
634	77	22			0.999999
635			77	22	0.999999
637	22			77	0.999999
668		66	33		1.0
670		10		90	0.90298
672		90		10	0.90298
673	90	10			0.90298
674	90		10		0.90298
675	90			10	0.90298
678		10		90	0.90298
679	90	10			0.90298
683	90		10		0.90298
684	90		10		0.90298
685	90	10			0.90298
689		10	90		0.90298
694		90		10	0.90298
741	28		71		1.0
748	88	11			0.923564
751		11	88		0.923564
756		11	66		0.999999
803		12		87	0.992554
857		87		12	0.992554
881		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain