SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3468

Length: 603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene3468 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1687	4/5

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein 36 [Arabidopsis thaliana] sp\|Q9FF81.1\|VPS36_ARATH RecName: Full=Vacuolar protein sorting-associated protein 36; Short=AtVPS36; AltName: Full=ESCRT-II complex subunit VPS36 dbj\|BAB11514.1\| unnamed protein product	-	-	63%
FL-Next	sp=Vacuolar protein sorting-associated protein 36; Arabidopsis thaliana (Mouse-ear cress).	-	-	31%
Blast2go	vacuolar protein sorting-associated protein 36-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	ESCRT II complex	GO:0000814	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	EAP30	IPR007286	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
220	83		16		0.994512
332	20			80	0.995493
334	80	20			0.995493
337		20	80		0.995493
342	20	80			0.995493
343		80	20		0.995493
344	80	20			0.995493
345	80	20			0.995493
346			80	20	0.995493
347		20	80		0.995493
350	80			20	0.995493
352			80	20	0.995493
354	25	75			0.996473
355	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain