SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3423

Length: 1408 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3423

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10255	15/17

Source	Descriptions	Term	Type	Identity
AutoFact	human Rev interacting-like protein-like [Oryza sativa Japonica Group] dbj\|BAD25012.1\| human Rev interacting-like protein-like [Oryza sativa Japonica Group]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	34%
Blast2go	arf-gap domain and fg repeats-containing protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	response to virus	GO:0009615	Biological Process	82%
Blast2go	regulation of ARF GTPase activity	GO:0032312	Biological Process	82%
Blast2go	nucleocytoplasmic transport	GO:0006913	Biological Process	82%
Blast2go	ARF GTPase activator activity	GO:0008060	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	GTPase activity	GO:0003924	Molecular Function	82%
Blast2go	GTP binding	GO:0005525	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Arf GTPase activating protein	IPR001164	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TBR5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 261 - 759

Fln protein: VVTLAVTHLWWQ*LVCISPVCSSFPWCINSLSWNTLLSSAAPAPPTSSQNVQPTQPATKPPLQGQGQGQHPSGSTQNGRNELPEDLFKLPYPEPVLHNTGFQLGSQFGGVSGVQYPSVGVSLPGPVPYYNPPSKSTNPFDITGELPATQGSTFPSMGSLQAALPISNTAPLAAPGSGHGAFNTQWTPSMTPSPYQPAASGLYMGQQVSNAFLPKAQSGATPPITSFPSGSFPSDDLFFNLGASRLSSQSSLPSVGGNPFG*

Protein Length: 262

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTGGTGGCAATAACTGGTCTGCATTTCCCCAGTCTGTTCGTCGTTCCCTTGGTGTATCAACTCTCTGTCATGGAATACTTTGTTGTCTTCTGCTGCTCCTGCTCCTCCGACGTCATCCCAAAATGTGCAACCAACTCAACCTGCAACTAAGCCGCCTCTTCAGGGACAGGGGCAGGGACAGCACCCATCAGGAAGTACACAGAATGGAAGGAATGAATTACCAGAGGACTTATTTAAGTTACCATATCCAGAACCAGTTTTACATAACACGGGTTTTCAATTGGGATCCCAGTTTGGTGGGGTTTCTGGAGTGCAATATCCTTCAGTAGGAGTGTCTTTGCCGGGTCCAGTGCCATATTATAATCCACCTTCGAAATCCACAAACCCATTTGATATTACAGGCGAACTACCTGCAACACAAGGAAGCACGTTTCCAAGCATGGGATCGTTGCAAGCTGCTTTGCCGATTTCCAACACAGCTCCTTTGGCTGCACCTGGTTCTGGTCACGGGGCTTTTAATACCCAATGGACGCCGTCTATGACACCAAGTCCCTATCAACCAGCTGCTTCTGGATTATACATGGGCCAGCAGGTGTCAAATGCTTTTTTGCCAAAAGCGCAATCTGGGGCAACACCTCCAATTACTAGTTTTCCGTCTGGTTCATTTCCCAGCGATGACCTCTTCTTCAATCTTGGAGCTTCTCGGCTGTCTTCTCAAAGTTCACTCCCTTCAGTTGGTGGTAACCCATTTGGTTAG___AATCATGGTGGAGACATGGAGTTTTTTTTCCTTGGAATGGAAATATAAATGGGCTGGACAACTTGCTGCTACTTTCCTGTTGCGAGGACCATGAGATTTTTGTATTAATGATTGCACCTAGGCGATTCCCCAAGTAGAGTTATTCTGAATTTTGCGCCGTTTGGGAAGTCTTGAGGTGAAATTCGATCTGAATGCAAGCAGGGGTGGAAATCATATAAGATTTTGCAGTGTGCAATCATTTGTTCCATTCAAGGCATTGGTCCAAATGTTTGCATATATTTCATCCCGATTCAAATATAGTATATATGAATAATTTGTTTAGTTCTCATGGAGTTACATGTTGTACCTAATGGCATTAGAAGATGCAAACAAATCGAGAGAATATTATTTAGCCTAAACATATATATTCATTTGTATTGGCAGGCCTCAGATTCAGGCCTACCCATTGCCCGCTAAATGGTATTAGGGTAAACTCTGAGGCGTGTGTGTACAATCGTCTGTTTTTTATAGGTTATTGACGTGAATTTGTTAGATGGAGCAGCATTTTCACTTGGCCGTGTGGGATTTGGAGGCTAAGGTTTTTTAGCCAGTCATTACTGTTTGCTTGTATTTAGTCTTTTAACG

Fln Alignment:

Contig3423___GRNELPEDLFKLPYPEPVLHNTGFQLGSQFGGVSGVQXXXXXXXXXXXXXXXNPPSKSTNPFDITGELPATQGSTFPSMGSLQAALPISNTAP-LAAPGSGHGAFNTQWTP------------------SMTPSPYQPAASGL----YMGQQVSNAFLPKAQSGATPPITSFPSGSFPSDDLFFN
D7TBR5_______________GRKELPLDLFAATYQPISMQVPGWQTGPPHGMGFHLQYNTAAPLPSTF----SHSSKSTNPFDLNNEPPPAQAPTFPSMASLQGSLP--NMPPSMGLLHSSSAGTQSTWTPPQSSLYPLAMPPQAPPYVSGMPPQVPPYASGMPPRAYMGQQVPGAIPPSSHQGV---------GSFGSEDAAFS

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
144	60			40	1.0
148		60	40		1.0
153		60		40	1.0
154	60			40	1.0
155	60		40		1.0
156	60		40		1.0
157	60	40			1.0
165	80			20	0.995493
167	20	60		20	0.99255
168	80	20			0.995493
314	71	28			1.0
315	71		28		1.0
317		28		71	1.0
319			71	28	1.0
325		66		33	1.0
326	66			33	1.0
328			33	66	1.0
329		33		66	1.0
332		16	66	16	0.988813
333	16	16		66	0.988813
334	16	16	66		0.988813
335		16	66	16	0.988813
336		16	66	16	0.988813
337	16	16	66		0.988813
338	16			83	0.994512
409	83	16			0.994512
438		60		40	1.0
532		16	83		0.994512
533	16		83		0.994512
719	20			80	0.995493
729			16	83	0.994512
731		16	83		0.994512
733	83			16	0.994512
736	16			83	0.994512
737		16		83	0.994512
740		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain