SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3408

Length: 1015 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3408

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27453	18/22
SustainPine v2.0	sp_v2.0_unigene66851	3/22

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal	-	-	3.0e-23	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Syntaxin 6, N-terminal	IPR015260	-	-

Full-Lengther Next Prediction

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
110	66	33			0.997452
111	66		33		0.997452
113		33	66		0.997452
114	66		33		0.997452
119	66	33			0.997452
123			33	66	0.997452
126			33	66	0.997452
127	66			33	0.997452
191	75	25			0.996473
196		75		25	0.996473
200		40		60	1.0
201		20	80		0.995493
203		20		80	0.995493
205	60		20	20	0.99255
206		20	80		0.995493
207	80			20	0.995493
209	60	20		20	0.99255
211	20			80	0.995493
212		20		80	0.995493
213			80	20	0.995493
214		20	80		0.995493
215	20	80			0.995493
216			80	20	0.995493
221		20	80		0.995493
224	20			80	0.995493
290		20	80		0.995493
292	80			20	0.995493
295	80			20	0.995493
296	80		20		0.995493
298	80	20			0.995493
302		80	20		0.995493
303	80		20		0.995493
304	80	20			0.995493
305	80			20	0.995493
306			20	80	0.995493
307	80			20	0.995493
308		20	80		0.995493
312		20	80		0.995493
313	20		80		0.995493
339		20	80		0.995493
342		20	80		0.995493
343	80		20		0.995493
347	80	20			0.995493
348		20	80		0.995493
349	80			20	0.995493
350	80			20	0.995493
354		80		20	0.995493
356		20	80		0.995493
358			80	20	0.995493
360	16	66	16		0.988813
361	83			16	0.994512
362	83	16			0.994512
364			83	16	0.994512
368	83	16			0.994512
369			83	16	0.994512
370	83			16	0.994512
371			16	83	0.994512
372	83		16		0.994512
373	83	16			0.994512
378		30	69		1.0
379	76		23		1.0
381		23		76	1.0
386		27		72	1.0
387		27		72	1.0
390			27	72	1.0
392		18		72	0.999994
395	81			18	0.999994
396		18		81	0.999994
398	9	18			0.999994
400		18		81	0.999994
401	18		81		0.999994
569			88	11	0.923564
571			11	88	0.923564
576	88			11	0.923564
579	88	11			0.923564
581	88			11	0.923564
582	88	11			0.923564
587		11	88		0.923564
588	11		88		0.923564
683			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain