SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3349

Length: 986 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3349

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7239	24/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0497 membrane protein 2 n=1 Tax=Picea sitchensis RepID=U4972_PICSI	-	-	2.0e-34	47%
FL-Next	sp=CASP-like protein 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	salicylic acid-induced fragment 1 protein	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	integral to membrane	GO:0016021	Cellular Component	72%
Blast2go	response to karrikin	GO:0080167	Biological Process	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
306		16		83	0.994512
311	83			16	0.994512
313		16		83	0.994512
314	83	16			0.994512
316	80			20	0.995493
317	80		20		0.995493
318	80		20		0.995493
325		20	80		0.995493
326	20		80		0.995493
328			80	20	0.995493
471		11		77	0.968132
473		88		11	0.923564
474		11		88	0.923564
476			77	22	0.999999
477		11	88		0.923564
479		11	77	11	0.968132
481	11			55	1.0
492		11	88		0.923564
538	75			25	1.0
547			90	10	0.90298
548	88		11		0.923564
549	88		11		0.923564
552	88		11		0.923564
554		11	88		0.923564
555	11	88			0.923564
557		88		11	0.923564
559	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain