SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3337

Length: 502 nt

UniGene Fasta

>uagpf_v2_unigene3337
CGTCGTGATCTTGGCTGTCACTCAGGTTTGAACCGCCATTTAAGGCGCATTTGCAGATTCGTGACCAGAAAGTGAGGGTTTGGATAGTATTTGAGCTGTCGTGCCTTGGTGTCTTTGAGTAATTGGACAGATCGGGTCAGCGTGAGGTATGTCGGACTCTAACGGCTCCCTGGCCGATGATGAGCTTTTGCAGGACTACTTGTATGGAAACGGCAGACCGCCTATACCCGAATCGGCCGGGCCGATGCTCACGGTATCGTCGTCCTTTAAATCAGACGGTAAGAGTAAGAGGAAAAGCTTGAGGCGGCCGAGTTTGGAGGCGGACGAGTTCTTGAATCTGTTGCACGGGTCTGATCCTGTCAAAGTTGAGCTCAATCGCCTCGAAAACGAAGTAAGAGATAAGGATAGAGAGTTAAGTGAAGCTCAAGCCGAAAATCAAGGCCTTGAAGCTGTCAGAGCGCTCTTCGCGAAGGCGGTGGAAGAGCTTACAGAGGAGCTTAGG

Ace file of the UniGene uagpf_v2_unigene3337

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24881	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule-associated proteins 70-2 [Arabidopsis thaliana] sp\|Q8L7S4.1\|MP702_ARATH RecName: Full=Microtubule-associated protein 70-2; Short=AtMAP70-2; AltName: Full=70 kDa microtubule-associated protein 2 gb\|AAM91095.1\| At1g68060/T23K23_9 [Arabidopsis th	-	-	64%
FL-Next	sp=Microtubule-associated protein 70-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	at1g68060 t23k23_9	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	83%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	83%
Blast2go	microtubule binding	GO:0008017	Molecular Function	83%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF581	IPR007650	-	0.0	-
Sma3	Myosin II heavy chain-like	IPR009768	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8L7S4

Fln msg: Distance to subject end: 511 aas, your sequence is shorter than subject: 118 - 634

Fln protein: MSDSNGSLADDELLQDYLYGNGRPPIPESAGPMLTVSSSFKSDGKSKRKSLRRPSLEADEFLNLLHGSDPVKVELNRLENEVRDKDRELSEAQAENQGLEAVRALFAKAVEELTEELR

Protein Length: 119

Fln nts: CGTCGTGATCTTGGCTGTCACTCAGGTTTGAACCGCCATTTAAGGCGCATTTGCAGATTCGTGACCAGAAAGTGAGGGTTTGGATAGTATTTGAGCTGTCGTGCCTTGGTGTCTTTGAGTAATTGGACAGATCGGGTCAGCGTGAGGT_-_ATGTCGGACTCTAACGGCTCCCTGGCCGATGATGAGCTTTTGCAGGACTACTTGTATGGAAACGGCAGACCGCCTATACCCGAATCGGCCGGGCCGATGCTCACGGTATCGTCGTCCTTTAAATCAGACGGTAAGAGTAAGAGGAAAAGCTTGAGGCGGCCGAGTTTGGAGGCGGACGAGTTCTTGAATCTGTTGCACGGGTCTGATCCTGTCAAAGTTGAGCTCAATCGCCTCGAAAACGAAGTAAGAGATAAGGATAGAGAGTTAAGTGAAGCTCAAGCCGAAAATCAAGGCCTTGAAGCTGTCAGAGCGCTCTTCGCGAAGGCGGTGGAAGAGCTTACAGAGGAGCTTAGG

Fln Alignment:

Contig3337___RPPIPESAGPMLTVSSSFKSDGKSKRKSLRRP---SLEA---DEFLNLLHGSDPVKVELNRLENEVRDKDRELSEAQAENQGLEAVRALFAKAVEELTEEL
Q8L7S4_______________QPPVSSATYPSLTVSASYKESSGGKSSSKRRPIRPSFDAAADNEFITLLHGSDPVKVELNRLENEVRDKDRELGEANAEIKALRLSERQREKAVEELTEEL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
83		33	66		0.997452
84	66		33		0.997452
86	66	33			0.997452
92		33		66	0.997452
99		50		50	1.0
103	12		87		0.992554
104		12		87	0.992554
105			87	12	0.992554
108	12	50	37		1.0
109			50	50	1.0
114	50			50	1.0
116			50	50	1.0
118	50			50	1.0
119		50		50	1.0
122		50	50		1.0
280	66	33			1.0
405	80	20			0.995493
407	80			20	0.995493
408	80	20			0.995493
410		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain