SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3324

Length: 1439 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3324

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11134	14/47
SustainPine v2.0	sp_v2.0_unigene28636	28/47
SustainPine v2.0	sp_v2.0_unigene77394	3/47

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	atp synthase subunit beta	-	-	1.82449e-42	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Asp/Glu racemase, active site	IPR018187	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL32

Fln msg: your sequence is shorter than subject: 284 - 335

Fln protein: VVTLAVTHRFRLVAETSGLPKSNFTELVCRKLSESVLSLTFCFPFLITLWLFGKAAIVHSVAGTS*PGKKLTIAKFITMIRKIWKRVMLTYIWVCIAIIGCIAVFLLLLVIVVNMAVSMGICSNCAIYAVLGLGVFFSVLFAHTLIICNLANVISIFEDCRGLAALFRSMHLIKGRTQVGLMIILGIASGTAFVESLYEYRVKSLNYGDVYSRMWEGPLLIIMYTFVVLIDAMMSCIFYFTCKCSSLESFDSHSLLEHTTSFSGSMELANVNDSSPSKLLVGS*

Protein Length: 285

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAGGTTTAGATTAGTAGCAGAGACATCCGGGCTGCCTAAGAGCAATTTTACCGAACTTGTGTGCCGGAAATTATCTGAGAGTGTTCTTTCGTTGACATTCTGCTTCCCTTTCTTGATCACCCTTTGGCTATTTGGCAAAGCTGCAATAGTGCACTCCGTGGCTGGAACGTCATGACCAGGTAAGAAACTTACAATTGCAAAGTTTATCACCATGATTCGCAAGATCTGGAAACGTGTCATGTTAACTTATATTTGGGTCTGTATTGCCATTATTGGATGCATTGCTGTTTTCCTCCTGCTGCTTGTCATCGTGGTGAATATGGCAGTCTCCATGGGGATTTGTTCAAACTGTGCTATCTATGCTGTGCTTGGGTTAGGAGTATTTTTCTCTGTGCTGTTTGCACACACTTTGATTATATGCAATTTGGCCAATGTGATCTCCATCTTCGAGGATTGCCGGGGCTTGGCAGCATTGTTTAGATCCATGCATTTAATCAAAGGGAGAACCCAAGTGGGTCTCATGATAATCCTGGGAATAGCTAGTGGGACTGCTTTTGTGGAAAGCCTCTATGAATATAGAGTGAAGTCTTTGAATTATGGTGATGTGTATTCCAGGATGTGGGAGGGTCCTCTTTTGATCATCATGTATACTTTTGTGGTGCTTATTGATGCCATGATGAGCTGCATCTTCTATTTCACTTGCAAATGTTCAAGTTTGGAAAGCTTTGACAGCCATTCTCTGCTGGAACACACCACCAGTTTTTCTGGATCGATGGAGCTAGCTAATGTGAATGATAGCTCCCCATCAAAGCTATTGGTGGGAAGCTAG___TGGATCGACTACACTGTAGAGAGGATGAAAGCTGCTGTGCATTATTTATTACCCTTCCGAACTTCAGGGAAGGGACATCTCTGTCAGGCAGATAATAGGTATTCTTTGGTTGCAGCTGTCATATTAGATGCTGGCATGTCTTTCGTTTAACATGCTGTAGCCATATTCTCTGACCCTGTTACTGAATTGATGAACAGTCAATTTTACGTTATCTAGTCCACACCATATATTATGTGTTTGCCAGCCAAAACCACCATATTATTCCTTCCAATTTTGTAATTACATTTGCTGCCAACATTATTTATGCAGAGACATCTGTTCTTTTAATAAATCATTCAATGACATCATTCATATCCTAGCTCAGTGAGCTGGTGCCATTGTTAGTACAAATAGAGGGAGAAAGAAAACATGTTCATTTCATGGCTTACTCCTCTAGTTTGTGTGCTGCCATTGTATTCTGAAATGGAAAGAATTCTCAGTAATATTTTGAGAATGTTAATACTGCCTGTGCAAGTTTATGTAGCTTTATTGTTGAATGAATTCATTGTCGGACTCTCTAATATCCAGGGCATCGAGTTTGAATTGC

Fln Alignment:

Contig3324___FLITLWLFGKAAIVHSVAGTS*PGKKLTIAKFITMIRKIWKRVMLTYIWVCIAIIG-----CIAXXXXXXXXXXNMAVSMGICSNCAIYAVLGLGVFFSVLFAHTLIICNLANVISIFEDCRGLAALFRSMHLIKGRTQVGLMIILGIASGTAFVESLYEYRVKSLN-YGDVYSRMWEGPLLIIMYTFVVLIDAMMSCIFYFTCKCSSLESFDSHSLLEHTTSFSG
B8LL32_______________FLLAFSLLSTAAVVYTVACIY-TGKQITYAKVMSVVPRVWKRLMLTFLWYFLIMIGYNTAVMVTFVVVILTVGVDNTVAFGLCVVVLLAVFLAVHVYISAIW-------HVASVISVLEDRYGIGAIKKSRDLIKGKRLVAFVLIFFYFVVWAVIQGIFRKKVVHVSGGGGIGSRVGFGVLLVGLLVYVNLIGLLVQSVLYYVCKSYHHQSIDKSALSDHLEEYLG

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
376		25		75	1.0
377		12	87		0.992554
378	12			87	0.992554
381		75		25	1.0
382			25	75	1.0
384		25		75	1.0
387	75			25	1.0
388			25	75	1.0
394		25	75		1.0
395	25			12	1.0
398		28		71	1.0
399	28		71		1.0
537		66	33		1.0
538	66			33	1.0
539	66	33			1.0
544		33	66		1.0
545		33	66		1.0
547		66		33	1.0
548			33	66	1.0
549		66	33		1.0
550	66	33			1.0
553	66			33	1.0
554		33		66	1.0
556	66	33			1.0
559	33	66			1.0
614	85	14			0.993533
620			14	85	0.993533
624	85	14			0.993533
625		14		85	0.993533
633	85	14			0.993533
634	14			85	0.993533
635		14	85		0.993533
637		14	85		0.993533
638	14			85	0.993533
647	85			14	0.993533
649		14	14		0.984337
651		14		85	0.993533
653		14	85		0.993533
656	85	14			0.993533
658			85	14	0.993533
660	14			85	0.993533
665		83		16	0.994512
666			16	83	0.994512
667			16	83	0.994512
668		16		83	0.994512
715	8	16	75		0.99999
779			87	12	0.999964
782	87	12			0.999964
784	87			12	0.999964
790		87		12	0.999964
918			33	66	1.0
922		66		33	1.0
925	66	33			1.0
930	66		22	11	1.0
932		22	66	11	1.0
933		11	66	22	1.0
934	77		22		1.0
935	66	11		22	1.0
936		22	55	11	1.0
937	22	11	66		1.0
938	11	22	66		1.0
939	72		5	22	1.0
1115		88		11	0.923564
1158	84		15		0.999986
1159	84			15	0.999986
1161	84		15		0.999986
1163			15	84	0.999986
1165		15		84	0.999986
1166		15		84	0.999986
1168	84			15	0.999986
1169			15	84	0.999986
1172	84			15	0.999986
1174	84			15	0.999986
1175		15	84		0.999986
1335	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain