SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3303

Length: 390 nt

UniGene Fasta

>uagpf_v2_unigene3303
CGTCGTGACCTTGGCTGTCACTCATCATTCAACAGCAGAAATCTAGGACAGACAAGGGAATTACTGATGCAGGACTTACAGCACTCGGGAAAGGTCTACCCAATTTGCATTCCTTGGATATTTCGCACTGCAAAAAAATACGGATCAAGGAATAAGGCCCCTTGCTGAGGGCTGTCCAAATTTGTCAACGTTGCGACTTGATGGCTGCAAATCTGTGACAGATGGGTCTTTGCAAGCACTATCTAAGAACTGCACAAAACTGGAAGAGCTGGGTTTGCAGAGCTGCATCAATATTACTGACAATGGCCTTTCAACACTAGCTCAAGGATGTCGTTCTATACGGATTCTAGAAATGAACAAGTGTGTTAAAGTTGGGGACACTGGAGTAAT

Ace file of the UniGene uagpf_v2_unigene3303

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene528	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative F-box and leucine-rich repeat protein [Jatropha curcas]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	f-box lrr-repeat protein 2-like	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Transcription regulator HTH, LacI	IPR000843	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Leucine-rich repeat, cysteine-containing subtype	IPR006553	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3		IPR015706	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVF7

Fln msg: Warning!, your query overlaps and the subject is separated, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 125 aas, your sequence is shorter than subject: 129 - 438

Fln protein: S*PWLSLIIQQQKSRTDKGITDAGLTALGKGLPNLHSLDISHCKKxxDQGIRPLAEGCPNLSTLRLDGCKSVTDGSLQALSKNCTKLEELGLQSCINITDNGLSTLAQGCRSIRILEMNKCVKVGDTGV

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCATTCAACAGCAGAAATCTAGGACAGACAAGGGAATTACTGATGCAGGACTTACAGCACTCGGGAAAGGTCTACCCAATTTGCATTCCTTGGATATTTCGCACTGCAAAAAAxxxxxxGATCAAGGAATAAGGCCCCTTGCTGAGGGCTGTCCAAATTTGTCAACGTTGCGACTTGATGGCTGCAAATCTGTGACAGATGGGTCTTTGCAAGCACTATCTAAGAACTGCACAAAACTGGAAGAGCTGGGTTTGCAGAGCTGCATCAATATTACTGACAATGGCCTTTCAACACTAGCTCAAGGATGTCGTTCTATACGGATTCTAGAAATGAACAAGTGTGTTAAAGTTGGGGACACTGGAGTAAT

Fln Alignment:

Contig3303___ITDAGLTALGKGLPNLHSLDISHCKKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTDQGIRPLAEGCPNLSTLRLDGCKSVTDGSLQALSKNCTKLEELGLQSCINITDNGLSTL
A9NVF7_______________LTDTSIDALARGCNHLEKLNISGCSKVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTDVGVTGLAQGCPEMRAVDLCSCVLITDKSVVALAENCPRLRSLGLYYCQNITDTAMYSL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
138	50			50	1.0
140	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain