SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3239

Length: 831 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3239

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21053	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	histone deacetylase	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	84%
Blast2go	histone deacetylation	GO:0016575	Biological Process	84%
Blast2go	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	84%
Blast2go	histone acetylation	GO:0016573	Biological Process	84%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	84%
Blast2go	histone deacetylase activity	GO:0004407	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%
Blast2go	regulation of multicellular organismal development	GO:2000026	Biological Process	84%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Histone deacetylase superfamily	IPR000286	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Histone deacetylase	IPR003084	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
208			33	66	0.997452
209	66			33	0.997452
211	66		33		0.997452
212	66			33	0.997452
216		33		66	0.997452
219		66		33	0.997452
220			33	66	0.997452
221			33	66	0.997452
222		33		66	0.997452
223	66			33	0.997452
225			66	33	0.997452
230	66	33			0.997452
231	33			66	0.997452
297		25		75	0.996473
301	75		25		0.996473
302			75	25	0.996473
304	25	75			0.996473
305		25	75		0.996473
306	75	25			0.996473
308	75			25	0.996473
315	66	33			0.997452
316	33		66		0.997452
317		33	66		0.997452
319		33		66	0.997452
320	33		66		0.997452
480		33		66	0.997452
481	66		33		0.997452
482	66			33	0.997452
483	66	33			0.997452
484			33	66	0.997452
493	66		33		0.997452
495	66			33	0.997452
496	66		33		0.997452
498		33	66		0.997452
500		33	66		0.997452
502	66	33			0.997452
503	33	66			0.997452
809	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain