SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3223

Length: 1109 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3223

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27545	18/19

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(P)/ATP NAD kinase, putative n=1 Tax=Ricinus communis RepID=B9RIE7_RICCO	-	-	63%
FL-Next	sp=Probable NAD kinase 1; Oryza sativa subsp. japonica (Rice).	-	-	77%
Blast2go	nad kinase 1	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH kinase.	EC:2.7.1.86	-	0.0	75%
Blast2go	NAD(+) kinase.	EC:2.7.1.23	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		0.0	75%
Blast2go	Metabolic pathways	01100		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	NADH kinase activity	GO:0042736	Molecular Function	75%
Blast2go	NAD+ kinase activity	GO:0003951	Molecular Function	75%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Inorganic polyphosphate/ATP-NAD kinase, predicted	IPR002504	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	ATP-NAD kinase, PpnK-type, all-beta	IPR017437	-	-
Sma3	ATP-NAD kinase, PpnK-type, alpha/beta	IPR017438	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q5JK52

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 310 - 532

Fln protein: S*PWLSLNFSKRNMQRYGQVA*RGEESKYIC*ESGEGRTS*ACLYFNFVQTWEKDEVLHLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSLGSLGFMTPFQSELFKECLQKVMEGPLSITLRHRLLCRIVRDESKDDRPIEEPILVLNDVALDRGMSSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPEVPGILFTPICPHSLSFRPLILPEYVVLRVQVPYNSRGNAWASFDGKDRKQLNAGDALLCSMAPWPVPTACEGDSTHDFLRSVCEGLHWNMRKKQSFDGIRET*

Protein Length: 311

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCAGTAAGAGAAACATGCAAAGATATGGTCAGGTGGCTTAAAGAGGAGAAGAAAGTAAATATATTTGTTGAGAGTCGGGTGAAGGAAGAACTTCTTGAGCTTGTCTGTATTTCAATTTTGTGCAAACATGGGAAAAAGATGAAGTTTTACACTTACACACAAAGGTAGACCTTGTTATAACACTTGGTGGAGATGGAACTGTTCTTTGGGCAGCATCAATGTTTAAGGGGCCAGTTCCACCTGTTGTGCCTTTTTCTCTAGGGTCACTGGGTTTTATGACACCCTTCCAGAGTGAATTGTTTAAGGAATGCCTACAAAAGGTTATGGAAGGTCCTTTAAGCATCACACTGCGCCATCGTTTACTCTGTCGAATTGTACGAGATGAATCAAAGGATGATAGACCTATAGAAGAACCTATATTGGTGTTGAATGATGTTGCTCTTGACCGTGGAATGTCATCCTTTCTTACAAATTTGGAGTGCTACTGCGATAATTCCTTTGTAACCTGTGTCCAGGGAGATGGTTTAATTTTATCAACAACATCAGGAAGTACAGCTTACTCACTGGCAGCAGGAGGCTCAATGGTTCACCCTGAGGTGCCTGGAATCCTTTTCACTCCAATTTGCCCCCATTCATTGTCATTTAGGCCTCTCATCTTACCTGAATATGTTGTCCTTCGTGTGCAAGTCCCTTATAACAGTAGAGGGAATGCATGGGCTTCCTTTGATGGAAAGGACCGTAAGCAGCTCAATGCAGGTGATGCGCTTCTGTGTAGCATGGCTCCTTGGCCTGTACCAACTGCATGCGAGGGGGATTCAACCCATGATTTCTTACGCAGTGTTTGTGAAGGCTTACATTGGAATATGAGAAAGAAGCAGTCATTTGATGGAATTCGAGAGACCTGA___CTTTTCTCGTATTCAATATCTTGGCCTTAACAACAGGGGTCAGTCCATTAGTAGTAAATATTCTTTTGTAATCTGAATGCCTATTTCAGAGAATTCTAGCTTTACATGTTTAACTTGTTTCTATCATTGTAATTTTGTAACATTTTTTAAGGTATAGGTGATCTTTGGCATCCTTAA

Fln Alignment:

Contig3223___YFNFVQTWEKDEVLH-LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSLGSLGFMTPFQSELFKECLQKVMEGPLSITLRHRLLCRIVRDESKDDRPIEEPILVLNDVALDRGMSSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPEVPGILFTPICPHSLSFRPLILPEYVVLRVQVPYNSRGNAWASFDGKDRKQLNAGDALLCSMAPWPVPTACEGDSTHDFLRSVCEGLHWNMRKKQSFDGIRE
Q5JK52_______________YYNFIQTWDDDEEKKMLHTKVDLIVTLGGDGTVLWAASLFKGPVPPVVAFSLGSLGFMTPFPSEQYRDCLDNVLNGPFSITLRNRLQCHVIRDAAKDELETEEPILVLNEVTIDRGISSYLTYLECYCDSSFVTCVQGDGLIISTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPEYVTLRVQVPHNSRGQAWASFDGKDRKLLSPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPRD

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
262	66			16	0.988813
265			16	66	0.988813
266	16	66			0.988813
271		83		16	0.994512
272	16		16	66	0.988813
274		16		83	0.994512
278		16	83		0.994512
279	16	83			0.994512
282	16			83	0.994512
442		20	80		0.995493
443	80		20		0.995493
444	80			20	0.995493
446		80	20		0.995493
450		20		80	0.995493
451	80	20			0.995493
461		20	80		0.995493
463	80	20			0.995493
466	20		80		0.995493
577	16	83			0.994512
578	83		16		0.994512
581	83		16		0.994512
582			83	16	0.994512
585	83	16			0.994512
586		16	83		0.994512
589		83		16	0.994512
590	83		16		0.994512
617	85	14			0.993533
618	85		14		0.993533
620		14	85		0.993533
624		85	14		0.993533
628		85		14	0.993533
633		14	85		0.993533
640		14	85		0.993533
647		37		62	1.0
648			37	62	1.0
652		62	37		1.0
654		62	37		1.0
655	37	62			1.0
656	62	37			1.0
657	62	37			1.0
660			37	62	1.0
663		62		37	1.0
664		62	37		1.0
665		62		37	1.0
667	87			12	0.992554
668		37		62	1.0
671	87		12		0.992554
672		12		75	0.975346
677	87		12		0.992554
679		12		87	0.992554
680			12	87	0.992554
681	87			12	0.992554
683	12		87		0.992554
685		88	11		0.923564
687		88		11	0.923564
688			11	88	0.923564
689		77	22		0.999999
690	88	11			0.923564
691		11		88	0.923564
692		88	11		0.923564
694		11		88	0.923564
695	88		11		0.923564
696		88	11		0.923564
697		88		11	0.923564
698		11		88	0.923564
699	11		88		0.923564
700	88	11			0.923564
702		11		88	0.923564
703	88			11	0.923564
704		11		88	0.923564
705	11		88		0.923564
778	90	10			0.90298
781	90			10	0.90298
784	10			90	0.90298
786	90	10			0.90298
787	90			10	0.90298
790		90	10		0.90298
791	90	10			0.90298
795		20	80		0.999996
851	90	10			0.90298
858		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain