SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3211

Length: 542 nt

UniGene Fasta

>uagpf_v2_unigene3211
CGTCGTGACCTTGGCTGTCACTCAGCGGCCCTATTCTACAACTGTTCGATTCTGGTGCGCCCCCGTCAGCTTAAATCAAAGTCTGGCGAGACGGATCCCATAACAGCGCAGGGCCGGACGGACCCTGCTCAGTCAACAGGGTTGGTCTTCCAGCACTGCACCGTGGATGGGACAAAAGAATACATGAGGGATTTCAGTTCCAATCCGGATGTTCACAGAGTGTATCTTGGCAGACCGTGGAAGATGTATTCAAGAACGGTTTTCTTGAATTCTTATTTGGGCAAACTCATCAGACCCGAGGGATGGATGCCCTGGAATGGATCATTTGCTCTCGATACGCTTTTCTATGGGGAATATCAGAATTATGGACCGGGGGCGAAGGTCTCTGGCAGAGTGCCATGGTCTAGTCACATTTCTGCGCACAATATAGGACTGTACTCAGTTCAAAGCTTCATACAGGGCGATGAATGGTTGTCGTCGAGCCACAGTACATAAATGACCAACGTCATTGTTAAGGTTGGATGTGTATTTGGGCAGTAAAT

Ace file of the UniGene uagpf_v2_unigene3211

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2856	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	pectin methylesterase	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	65%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	65%
Blast2go	Starch and sucrose metabolism	00500	65%
Blast2go	Metabolic pathways	01100	65%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	65%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	65%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	65%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	65%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	65%
Blast2go	cell wall	GO:0005618	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADI1

Fln msg: your sequence is shorter than subject: 165 - 553

Fln protein: RRDLGCHSAALFYNCSILVRPRQLKSKSGETDPITAQGRTDPAQSTGLVFQHCTVDGTKEYMRDFSSNPDVHRVYLGRPWKMYSRTVFLNSYLGKLIRPEGWMPWNGSFALDTLFYGEYQNYGPGAKVSGRVPWSSHISAHNIGLYSVQSFIQGDEWLSSSHST*

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGCCCTATTCTACAACTGTTCGATTCTGGTGCGCCCCCGTCAGCTTAAATCAAAGTCTGGCGAGACGGATCCCATAACAGCGCAGGGCCGGACGGACCCTGCTCAGTCAACAGGGTTGGTCTTCCAGCACTGCACCGTGGATGGGACAAAAGAATACATGAGGGATTTCAGTTCCAATCCGGATGTTCACAGAGTGTATCTTGGCAGACCGTGGAAGATGTATTCAAGAACGGTTTTCTTGAATTCTTATTTGGGCAAACTCATCAGACCCGAGGGATGGATGCCCTGGAATGGATCATTTGCTCTCGATACGCTTTTCTATGGGGAATATCAGAATTATGGACCGGGGGCGAAGGTCTCTGGCAGAGTGCCATGGTCTAGTCACATTTCTGCGCACAATATAGGACTGTACTCAGTTCAAAGCTTCATACAGGGCGATGAATGGTTGTCGTCGAGCCACAGTACATAA___ATGACCAACGTCATTGTTAAGGTTGGATGTGTATTTGGGCAGTAAAT

Fln Alignment:

Contig3211___HSAALFYNCSILVRPRQLKSKSGETDPITAQGRTDPAQSTGLVFQHCTVDGTKEYMRDFSSNPDVHRVYLGRPWKMYSRTVFLNSYLGKLIRPEGWMPWNGSFALDTLFYGEYQNYGPGAKVSGRVPWSSHISAHNIGLYSVQSFIQGDEWLSSSHST
D5ADI1_______________NAAALFHNCSILVRPRQLKSNSGEDDPITAQGRTDPAQSTGLVFQHCTVDGTKEYRKDFSSNPSAHKVYLGRPWKMYSRTVFLNSYLGKLVRPEGWMPWNGTFALDTLFYGEYRNYGFGAKVSGRVPWSNQISELNVGLYSVPSFIQGHEWLPSTDST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain