SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3187

Length: 864 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene3187

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7374	11/16
SustainPine v2.0	sp_v2.0_unigene53873	2/16

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	0.0	68%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
164			33	66	0.997452
166		33	66		0.997452
167		66	33		0.997452
168	66			33	0.997452
172	66	33			0.997452
175	66			33	0.997452
177	66		33		0.997452
178		33	66		0.997452
184		33	66		0.997452
187	33			66	0.997452
205	83	16			0.994512
208		16		83	0.994512
210		83		16	0.994512
211			16	83	0.994512
213		16	83		0.994512
221	83			16	0.994512
223	83			16	0.994512
226	83			16	0.994512
228	16	83			0.994512
235		66	33		1.0
264	16	83			0.994512
286	66	33			1.0
319	60		40		1.0
335	60	40			1.0
383		77	22		0.999999
395	50	33	16		1.0
435		25		75	0.996473
439			25	75	0.996473
445		50	50		1.0
475	85		14		0.993533
478		85	14		0.993533
481	85	14			0.993533
483		85		14	0.993533
484	85		14		0.993533
487		85	14		0.993533
490	85	14			0.993533
542			42	57	1.0
548		14		85	0.993533
550	83			16	0.994512
551	83	16			0.994512
553			83	16	0.994512
556	83	16			0.994512
557	83	16			0.994512
559			83	16	0.994512
561			16	83	0.994512
562		16	83		0.994512
564	42		57		1.0
566		14		85	0.993533
567	14		85		0.993533
568		14	85		0.993533
569			85	14	0.993533
585	28		71		1.0
587	28			71	1.0
596	85		14		0.993533
626	80		20		0.995493
663		20		80	0.995493
746	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain