SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene3142

Length: 2176 nt

UniGene Fasta

>uagpf_v2_unigene3142
CGTCGTGACCTTGGTTGTCACTCAATCGGGCAAAGAGTCTTGGCCGATGAAGCAGAAGGGAAGAGACTCAAACCGCAGATCAAGAACATTTTCAAGATCTCGTATCGCTATTGAAGGTTGCTAGCATCTCCTTTGTTAGCTTTTGGTTTTATTTCTTGAATCTGGGCTCCCTTGGGCAATAGATCTGCGAGCATTTTGGACCAGGGCCCATGCAACAGAAAGGAAGAAACTCAAACCGAAGATCCAGAACATTTTCTCGCTCTCGTATCGCCATTGAAGGCTGCTAGCATCTCCTTTACTGGCGGTTGGTTTTACTTTTCATCCAGTCTTTTCTGGGTATACCATTTTCACGAACCATGGCCGTCAATGGCGAGAGGGCTCGTCAATTGAACTACTGGAAGGAGCATTCCGTCGTTCTGAGCTTGGAAGCCATGATGCTTGACAGTCAGGCTTCAAAGCTAGATGAAGAAGAAAGGCCAGAGATACTTTCTCTTTTACCATCACGCAAGGGTAAGTCGGTAATTGAGCTAGGAGCTGGCATTGGACGCTACACAGCTGAATTAGCGAAGGAGGCTGAACATGTTTTAGCTATGGACTTCATTGAGAGTGCAATCAAAAAGAATGAAGAAACAAATAGCCACTTCAAGAATGTCAAATTTATGTGTGCCGATGTTACGTCCCCAGACCTCAAAATCGAACCAGGGTCTGCTGATATAGTATTTTCAAATTGGCTGCTAATGTATCTATCAGATGAAGAGGTAGTTGAACTAGCAAAGAAGATGGTACAGTGGGTGAAAATGGGTGGATACATATTTTTTAGAGAATCCTGTTTTCATCAGTCTGGAGATCATAAGCGCAAAGCTAACCCAACACATTATCGAGAACCAAGCTTTTACCTTAAGGCTTTCCAAGAGTGCCTGGTGAATGATGTATCTGGAAACCTTTCAGAATTGTCCCTTGTTTTCTGCAAATGTGTTGGAGCTTATGTAAGAAACAAAAAGAATCAAAATCAGATTTGCTGGCTCTGGCAGAAGATTCCTTCAGAAGATGACAAGGGTTTTCAGCGGTTCTTGGACAGTGTCCAGTATACTCTTAATGGCATTTTGCGGTATGAGCGAATATTTGGTGAAGGTTTTGTCAGTACGGGAGGAATAGAGACTACAAAGGAATTTGTTGACAAACTTGAGCTCAAGGCTGGTCAAAAGGTACTTGACGTGGGCTGTGGAATTGGAGGAGGTGACTTTTACATGGCTGAAACCTTTGAAGTTGAGGTTACGGCTATTGACCTTTCTATAAACATGATTTCATTTGCTTTGGAGAGGGCCATTGGTCGACGATGTGCTGTGGAATTTGAGGTTTCAGACTGTACAAAAAAGGATATCCGGAGGGTACATTCGATGTGATTTACAGCCGGGACACAATACTTCATATCCAGGATAAGCCAACTTTATTTCAGAAATTTTACAAATGGTTGAAGCCTGGAGGTAGACTGCTCATCAGTGATTACTGCAAAAAACATGGAACAACGTCCTTGGAATTTCATGAATACATTAAGCAGCGTGGATATGATTTACATGATGTAGATGCATATGGTCAGATGCTCAGGGATGCTGGATTTGATAATGTCATCGCGGAAGATCGCACAGATCAGTTCATAAAAATACTGCAGAAAGAGCTTTCTTCTGCAGAGAAGGATAAGGACGCTTTTATTCATGATTTCTCAGAGGAAGATTATGCATCAATTATTGATGGGTGGAAGTCGAAATTAAAGAGGACTTCGCAAGGTGAACAGAAGTGGGGTCTTTTTCTCGCTAGAAAGGGTTCCTATTCCAACGGGGATCATTAATATGGTTAAATTGGGACACATCATTGTGCACAAGTGTGCTTGTGATCAGCACATATTCTTCTTCTATATGGTTTCATATATTACTACAGATGTTGATCCTATTAAGCTACTGCTGGTACTTTTCATTTATTATAATAGATAATGTTAATAGATATATCTAAGTACATTGATTGACTTCAGCTGTGAAGATTAAGAAATTGGCATTATTAGTTTCAGCGTACAATTTAATGTGAGGTCTATGAAAATGATATAGATGAAATGCAAGACAATATTTTTGAACAAGTGGCACAGCAGTGGCTTTATCTCCTGATAATGAACTTGTGAATGTTT

Ace file of the UniGene uagpf_v2_unigene3142

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28128	77/96
SustainPine v2.0	sp_v2.0_unigene63948	5/96
SustainPine v2.0	sp_v2.0_unigene69794	1/96

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoethanolamine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9T1H8_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phosphoethanolamine n-methyltransferase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoethanolamine N-methyltransferase.	EC:2.1.1.103	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	phosphatidylcholine biosynthetic process	GO:0006656	Biological Process	85%
Blast2go	choline biosynthetic process	GO:0042425	Biological Process	85%
Blast2go	pollen tube growth	GO:0009860	Biological Process	85%
Blast2go	pollen development	GO:0009555	Biological Process	85%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	85%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	85%
Blast2go	phosphoethanolamine N-methyltransferase activity	GO:0000234	Molecular Function	85%
Blast2go	phosphomethylethanolamine N-methyltransferase activity	GO:0052667	Biological Process	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyltransferase type 11	IPR013216	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVZ7

Fln msg: Overlapping hits, possible frame ERROR between 1379 and 1370,

Fln protein: MAVNGERARQLNYWKEHSVVLSLEAMMLDSQASKLDEEERPEILSLLPSRKGKSVIELGAGIGRYTAELAKEAEHVLAMDFIESAIKKNEETNSHFKNVKFMCADVTSPDLKIEPGSADIVFSNWLLMYLSDEEVVELAKKMVQWVKMGGYIFFRESCFHQSGDHKRKANPTHYREPSFYLKAFQECLVNDVSGNLSELSLVFCKCVGAYVRNKKNQNQICWLWQKIPSEDDKGFQRFLDSVQYTLNGILRYERIFGEGFVSTGGIETTKEFVDKLELKAGQKVLDVGCGIGGGDFYMAETFEVEVTAIDLSINMISFALERAIGRRCAVEFEVSDCxxxxxPEGTFDVIYSRDTILHIQDKPTLFQKFYKWLKPGGRLLISDYCKKHGTTSLEFHEYIKQRGYDLHDVDAYGQMLRDAGFDNVIAEDRTDQFIKILQKELSSAEKDKDAFIHDFSEEDYASIIDGWKSKLKRTSQGEQKWGLFLARKGSYSNGDH*

Protein Length: 498

Fln nts: CGTCGTGACCTTGGTTGTCACTCAATCGGGCAAAGAGTCTTGGCCGATGAAGCAGAAGGGAAGAGACTCAAACCGCAGATCAAGAACATTTTCAAGATCTCGTATCGCTATTGAAGGTTGCTAGCATCTCCTTTGTTAGCTTTTGGTTTTATTTCTTGAATCTGGGCTCCCTTGGGCAATAGATCTGCGAGCATTTTGGACCAGGGCCCATGCAACAGAAAGGAAGAAACTCAAACCGAAGATCCAGAACATTTTCTCGCTCTCGTATCGCCATTGAAGGCTGCTAGCATCTCCTTTACTGGCGGTTGGTTTTACTTTTCATCCAGTCTTTTCTGGGTATACCATTTTCACGAACC_-_ATGGCCGTCAATGGCGAGAGGGCTCGTCAATTGAACTACTGGAAGGAGCATTCCGTCGTTCTGAGCTTGGAAGCCATGATGCTTGACAGTCAGGCTTCAAAGCTAGATGAAGAAGAAAGGCCAGAGATACTTTCTCTTTTACCATCACGCAAGGGTAAGTCGGTAATTGAGCTAGGAGCTGGCATTGGACGCTACACAGCTGAATTAGCGAAGGAGGCTGAACATGTTTTAGCTATGGACTTCATTGAGAGTGCAATCAAAAAGAATGAAGAAACAAATAGCCACTTCAAGAATGTCAAATTTATGTGTGCCGATGTTACGTCCCCAGACCTCAAAATCGAACCAGGGTCTGCTGATATAGTATTTTCAAATTGGCTGCTAATGTATCTATCAGATGAAGAGGTAGTTGAACTAGCAAAGAAGATGGTACAGTGGGTGAAAATGGGTGGATACATATTTTTTAGAGAATCCTGTTTTCATCAGTCTGGAGATCATAAGCGCAAAGCTAACCCAACACATTATCGAGAACCAAGCTTTTACCTTAAGGCTTTCCAAGAGTGCCTGGTGAATGATGTATCTGGAAACCTTTCAGAATTGTCCCTTGTTTTCTGCAAATGTGTTGGAGCTTATGTAAGAAACAAAAAGAATCAAAATCAGATTTGCTGGCTCTGGCAGAAGATTCCTTCAGAAGATGACAAGGGTTTTCAGCGGTTCTTGGACAGTGTCCAGTATACTCTTAATGGCATTTTGCGGTATGAGCGAATATTTGGTGAAGGTTTTGTCAGTACGGGAGGAATAGAGACTACAAAGGAATTTGTTGACAAACTTGAGCTCAAGGCTGGTCAAAAGGTACTTGACGTGGGCTGTGGAATTGGAGGAGGTGACTTTTACATGGCTGAAACCTTTGAAGTTGAGGTTACGGCTATTGACCTTTCTATAAACATGATTTCATTTGCTTTGGAGAGGGCCATTGGTCGACGATGTGCTGTGGAATTTGAGGTTTCAGACTGTxxxxxxxxxxxxxxxCCGGAGGGTACATTCGATGTGATTTACAGCCGGGACACAATACTTCATATCCAGGATAAGCCAACTTTATTTCAGAAATTTTACAAATGGTTGAAGCCTGGAGGTAGACTGCTCATCAGTGATTACTGCAAAAAACATGGAACAACGTCCTTGGAATTTCATGAATACATTAAGCAGCGTGGATATGATTTACATGATGTAGATGCATATGGTCAGATGCTCAGGGATGCTGGATTTGATAATGTCATCGCGGAAGATCGCACAGATCAGTTCATAAAAATACTGCAGAAAGAGCTTTCTTCTGCAGAGAAGGATAAGGACGCTTTTATTCATGATTTCTCAGAGGAAGATTATGCATCAATTATTGATGGGTGGAAGTCGAAATTAAAGAGGACTTCGCAAGGTGAACAGAAGTGGGGTCTTTTTCTCGCTAGAAAGGGTTCCTATTCCAACGGGGATCATTAA___TATGGTTAAATTGGGACACATCATTGTGCACAAGTGTGCTTGTGATCAGCACATATTCTTCTTCTATATGGTTTCATATATTACTACAGATGTTGATCCTATTAAGCTACTGCTGGTACTTTTCATTTATTATAATAGATAATGTTAATAGATATATCTAAGTACATTGATTGACTTCAGCTGTGAAGATTAAGAAATTGGCATTATTAGTTTCAGCGTACAATTTAATGTGAGGTCTATGAAAATGATATAGATGAAATGCAAGACAATATTTTTGAACAAGTGGCACAGCAGTGGCTTTATCTCCTGATAATGAACTTGTGAATGTTT

Fln Alignment:

Contig3142___MAVNGERARQLNYWKEHSVVLSLEAMMLDSQASKLDEEERPEILSLLPSRKGKSVIELGAGIGRYTAELAKEAEHVLAMDFIESAIKKNEETNSHFKNVKFMCADVTSPDLKIEPGSADIVFSNWLLMYLSDEEVVELAKKMVQWVKMGGYIFFRESCFHQSGDHKRKANPTHYREPSFYLKAFQECLVNDVSGNLSELSLVFCKCVGAYVRNKKNQNQICWLWQKIPSEDDKGFQRFLDSVQYTLNGILRYERIFGEGFVSTGGIETTKEFVDKLELKAGQKVLDVGCGIGGGDFYMAETFEVEVTAIDLSINMISFALERAIGRRCAVEFEVSDCTxxxYPEGTFDVIYSRDTILHIQDKPTLFQKFYKWLKPGGRLLISDYCKKHGTTSLEFHEYIKQRGYDLHDVDAYGQMLRDAGFDNVIAEDRTDQFIKILQKELSSAEKDKDAFIHDFSE
A9NVZ7_______________MAVNGERALQLNYWKEHSVVLSLEAMMLDSQASKLDQEERPEIISLLPPLEGKSVIELGAGIGRYTVELAQKADHILAMDFIESAIKKNEETNGHFKNVEFMCADVTSADLKIEPGSADLVFSNWLLMYLSDEEVVELAKKMVQWVKMGGYVFFRESCFHQSGDHKREANPTHYREPSFYLKVFQECLVKDVSGNLSELSLVGCKCVGAYVKNKKNQNQICWLWQKISSVDDKGFQRFLDNVQYTLTGILRYERIFGEGFVSTGGIETTKEFVDKLELKAGQKVLDVGCGIGGGDFYMADTFDVEVMAIDLSINMISFALERAIGRQCAVEFEVSDCTxxxYPEGTFDVIYSRDTILHIQDKPVLFQKFYKWLKPGGRLLISDYCKEHGTASLEFHAYIKQRGYDLHDVDAYGQMLRDAGFDDVVAEDRTDQFIKILQKELSSAEKDKDAFIRDFSE

SNPs (tot: 151)

Position	A %	C %	G %	T %	Probability
118		20		80	0.995493
280		33	66		0.997452
282		66		33	0.997452
283		33		66	0.997452
285		66		33	0.997452
286		25	25	50	0.995533
287	75		25		0.996473
288		25	50	25	0.995533
290	50		25	25	0.995533
292		50	50		1.0
293	25		25	50	0.995533
295		75		25	0.996473
296			25	75	0.996473
298		25	25	50	0.995533
299	75		25		0.996473
300		50		50	1.0
303		25	50	25	0.995533
304	25	75			0.996473
306	25		75		0.996473
307		25		75	0.996473
309		25	75		0.996473
310	25		75		0.996473
363		83		16	0.994512
368	83	16			0.994512
372		50		50	1.0
395	87	12			0.992554
396		87	12		0.992554
399	12		87		0.992554
400	87	12			0.992554
401	87	12			0.992554
402			87	12	0.992554
403			87	12	0.992554
404	87		12		0.992554
407	87			12	0.992554
408			12	87	0.992554
411	12	87			0.992554
412		12	87		0.992554
489			12	87	0.992554
491		87	12		0.992554
492	12			87	0.992554
494		12		75	0.975346
497			12	87	0.992554
498	87		12		0.992554
500		87		12	0.992554
501	87		12		0.992554
506			87	12	0.992554
549		75		25	1.0
669		60		40	1.0
683		60	40		1.0
697		75		25	0.996473
728	87	12			0.992554
729	87	12			0.992554
818		37		62	1.0
819			37	62	1.0
821	62	37			1.0
823	62			37	1.0
827		37		62	1.0
829		62		37	1.0
833		37		62	1.0
835			37	62	1.0
925			75	25	1.0
931		10		90	0.90298
933	90			10	0.90298
934		10		90	0.90298
938		10		90	0.90298
943	90	10			0.90298
944	90			10	0.90298
945	90		10		0.90298
946		90		10	0.90298
948	10			90	0.90298
949		10		90	0.90298
991		10		90	0.90298
995	90	10			0.90298
997	88			11	0.923564
998	88		11		0.923564
1003	85	14			0.993533
1004	85			14	0.993533
1005	85			14	0.993533
1007	85		14		0.993533
1008	85	14			0.993533
1010		85	14		0.993533
1011	85			14	0.993533
1012	85	14			0.993533
1014	87	12			0.992554
1050	60	40			1.0
1104			87	12	0.992554
1391			81	18	0.999994
1434	80		20		0.999996
1435		20		80	0.999996
1437			11	88	0.923564
1438		88		11	0.923564
1439		88	11		0.923564
1444		11		88	0.923564
1524	33	66			1.0
1539			36	63	1.0
1542	36		63		1.0
1543	63	36			1.0
1544	63	36			1.0
1548			36	63	1.0
1551	63		36		1.0
1553		36	63		1.0
1555	63	36			1.0
1557	72	27			1.0
1558	27	72			1.0
1664	84		15		0.999986
1666	84		15		0.999986
1667	84			15	0.999986
1668	84		15		0.999986
1670	84	15			0.999986
1671		15		84	0.999986
1672	84			15	0.999986
1673		84		15	0.999986
1674			15	84	0.999986
1677	84			15	0.999986
1679	84			15	0.999986
1680	84	15			0.999986
1682		15	84		0.999986
1683	84			15	0.999986
1684		15	84		0.999986
1685	15	84			0.999986
1690			13	80	0.999961
1696	86	13			0.999973
1697			86	13	0.999973
1698	86			13	0.999973
1700	86		13		0.999973
1701	86	13			0.999973
1702			86	13	0.999973
1808		13	80	6	0.999961
1812			13	86	0.999973
1814			13	86	0.999973
1815	13			86	0.999973
1816		13		86	0.999973
1819		86	13		0.999973
1825	86			13	0.999973
1826	86	13			0.999973
1830		13	86		0.999973
1832		13		86	0.999973
1833	9	90			0.999872
1834		90	9		0.999872
1836	90	9			0.999872
1837			9	90	0.999872
1840		90	9		0.999872
1842	90	9			0.999872
1844			90	9	0.999872
1845			90	9	0.999872
1848	90	9			0.999872
1851	90		9		0.999872
1853		9		90	0.999872
1855	90	9			0.999872
1857	90	9			0.999872
1858	9			90	0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain